Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

SNPRelate cannot find variant.id from SeqArray object #76

Open
yanglipmed opened this issue Dec 17, 2020 · 2 comments
Open

SNPRelate cannot find variant.id from SeqArray object #76

yanglipmed opened this issue Dec 17, 2020 · 2 comments

Comments

@yanglipmed
Copy link

In SeqArray object, this is variant.id. When SNPRelate::snpgdsSummary( ) opens SeqArray object, it gives error: Error in index.gdsn(gds, "snp.id") : No such GDS node "snp.id"!.

How to link snp.id to variant.id in SNPRelate?
@zhengxwen
Copy link
Owner

Please use seqSummary() in the SeqArray package instead.

@yanglipmed
Copy link
Author

Thanks.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@yanglipmed @zhengxwen