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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(SpatialInteractionPlot)
export(calculate_score)
export(init_smk_script)
export(load_data)
export(run_CARD)
export(run_DWLS)
export(run_cooccur)
export(run_iascore)
export(run_rctd)
importFrom(AUCell,AUCell_buildRankings)
importFrom(AUCell,AUCell_calcAUC)
importFrom(AUCell,getAUC)
importFrom(CARD,CARD_deconvolution)
importFrom(CARD,createCARDObject)
importFrom(GSEABase,getGmt)
importFrom(Giotto,activeFeatType)
importFrom(Matrix,as.matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,GetTissueCoordinates)
importFrom(Seurat,Idents)
importFrom(Seurat,Load10X_Spatial)
importFrom(Seurat,Read10X)
importFrom(Seurat,SpatialFeaturePlot)
importFrom(VISION,Vision)
importFrom(VISION,analyze)
importFrom(assertable,assert_colnames)
importFrom(checkmate,assert_class)
importFrom(checkmate,assert_false)
importFrom(checkmate,assert_true)
importFrom(checkmate,checkPathForOutput)
importFrom(checkmate,check_choice)
importFrom(checkmate,check_class)
importFrom(checkmate,check_list)
importFrom(cooccur,cooccur)
importFrom(glue,glue)
importFrom(parallel,mclapply)
importFrom(plyr,mapvalues)
importFrom(spacexr,SpatialRNA)
importFrom(spacexr,create.RCTD)
importFrom(spacexr,run.RCTD)
importFrom(stringr,str_to_title)
importFrom(tibble,tibble)
importFrom(tools,file_path_sans_ext)
importFrom(yaml,write_yaml)