Space Ranger is a set of analysis pipelines that process 10x Genomics Visium data with brightfield or fluorescence microscope images, allowing users to map the whole transcriptome in a variety of tissues. Space Ranger v3.1 now supports Visium HD.
Please note that this source code is made available only for informational purposes. 10x does not provide support for interpreting, modifying, building, or running this code.
The officially supported release binaries are available at https://www.10xgenomics.com/support/software/space-ranger/downloads. Documentation is available at https://www.10xgenomics.com/support/software/space-ranger.