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Add parent_dir to access CSV file on binder
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@jnywong
jnywong committed Jul 25, 2024
1 parent f395857 commit 5030aca
Showing 1 changed file with 32 additions and 8 deletions.
40 changes: 32 additions & 8 deletions book/tutorials/IS2_cloud_Landsat_integration.ipynb
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Original file line number Diff line number Diff line change
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},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 17,
"metadata": {
"tags": []
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Expand All @@ -48,7 +48,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 18,
"metadata": {
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},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 19,
"metadata": {
"tags": []
},
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},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 20,
"metadata": {
"tags": []
},
Expand All @@ -121,7 +121,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 21,
"metadata": {
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Expand All @@ -146,11 +146,35 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 22,
"metadata": {
"tags": []
},
"outputs": [],
"outputs": [
{
"ename": "DriverError",
"evalue": "/Users/jnywong/Documents/github/CryoCloudWebsite/book/tutorials/book/tutorials/hackweek_kml_jakobshavan.kml: No such file or directory",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mCPLE_OpenFailedError\u001b[0m Traceback (most recent call last)",
"File \u001b[0;32mfiona/ogrext.pyx:136\u001b[0m, in \u001b[0;36mfiona.ogrext.gdal_open_vector\u001b[0;34m()\u001b[0m\n",
"File \u001b[0;32mfiona/_err.pyx:291\u001b[0m, in \u001b[0;36mfiona._err.exc_wrap_pointer\u001b[0;34m()\u001b[0m\n",
"\u001b[0;31mCPLE_OpenFailedError\u001b[0m: /Users/jnywong/Documents/github/CryoCloudWebsite/book/tutorials/book/tutorials/hackweek_kml_jakobshavan.kml: No such file or directory",
"\nDuring handling of the above exception, another exception occurred:\n",
"\u001b[0;31mDriverError\u001b[0m Traceback (most recent call last)",
"Cell \u001b[0;32mIn[22], line 3\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;66;03m# Open KML file for use\u001b[39;00m\n\u001b[1;32m 2\u001b[0m fiona\u001b[38;5;241m.\u001b[39mdrvsupport\u001b[38;5;241m.\u001b[39msupported_drivers[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mLIBKML\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mrw\u001b[39m\u001b[38;5;124m'\u001b[39m \u001b[38;5;66;03m# enable KML support which is disabled by default\u001b[39;00m\n\u001b[0;32m----> 3\u001b[0m jk \u001b[38;5;241m=\u001b[39m \u001b[43mgpd\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mread_file\u001b[49m\u001b[43m(\u001b[49m\u001b[43mspatial_extent\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[0;32m~/builds/miniforge3/envs/cryocloud/lib/python3.11/site-packages/geopandas/io/file.py:281\u001b[0m, in \u001b[0;36m_read_file\u001b[0;34m(filename, bbox, mask, rows, engine, **kwargs)\u001b[0m\n\u001b[1;32m 278\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 279\u001b[0m path_or_bytes \u001b[38;5;241m=\u001b[39m filename\n\u001b[0;32m--> 281\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_read_file_fiona\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 282\u001b[0m \u001b[43m \u001b[49m\u001b[43mpath_or_bytes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mfrom_bytes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mbbox\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mbbox\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mmask\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mmask\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mrows\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mrows\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\n\u001b[1;32m 283\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 285\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 286\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124munknown engine \u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mengine\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n",
"File \u001b[0;32m~/builds/miniforge3/envs/cryocloud/lib/python3.11/site-packages/geopandas/io/file.py:322\u001b[0m, in \u001b[0;36m_read_file_fiona\u001b[0;34m(path_or_bytes, from_bytes, bbox, mask, rows, where, **kwargs)\u001b[0m\n\u001b[1;32m 319\u001b[0m reader \u001b[38;5;241m=\u001b[39m fiona\u001b[38;5;241m.\u001b[39mopen\n\u001b[1;32m 321\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m fiona_env():\n\u001b[0;32m--> 322\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[43mreader\u001b[49m\u001b[43m(\u001b[49m\u001b[43mpath_or_bytes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;28;01mas\u001b[39;00m features:\n\u001b[1;32m 323\u001b[0m crs \u001b[38;5;241m=\u001b[39m features\u001b[38;5;241m.\u001b[39mcrs_wkt\n\u001b[1;32m 324\u001b[0m \u001b[38;5;66;03m# attempt to get EPSG code\u001b[39;00m\n",
"File \u001b[0;32m~/builds/miniforge3/envs/cryocloud/lib/python3.11/site-packages/fiona/env.py:457\u001b[0m, in \u001b[0;36mensure_env_with_credentials.<locals>.wrapper\u001b[0;34m(*args, **kwds)\u001b[0m\n\u001b[1;32m 454\u001b[0m session \u001b[38;5;241m=\u001b[39m DummySession()\n\u001b[1;32m 456\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m env_ctor(session\u001b[38;5;241m=\u001b[39msession):\n\u001b[0;32m--> 457\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mf\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwds\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[0;32m~/builds/miniforge3/envs/cryocloud/lib/python3.11/site-packages/fiona/__init__.py:292\u001b[0m, in \u001b[0;36mopen\u001b[0;34m(fp, mode, driver, schema, crs, encoding, layer, vfs, enabled_drivers, crs_wkt, allow_unsupported_drivers, **kwargs)\u001b[0m\n\u001b[1;32m 289\u001b[0m path \u001b[38;5;241m=\u001b[39m parse_path(fp)\n\u001b[1;32m 291\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m mode \u001b[38;5;129;01min\u001b[39;00m (\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124ma\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mr\u001b[39m\u001b[38;5;124m\"\u001b[39m):\n\u001b[0;32m--> 292\u001b[0m colxn \u001b[38;5;241m=\u001b[39m \u001b[43mCollection\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 293\u001b[0m \u001b[43m \u001b[49m\u001b[43mpath\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 294\u001b[0m \u001b[43m \u001b[49m\u001b[43mmode\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 295\u001b[0m \u001b[43m \u001b[49m\u001b[43mdriver\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mdriver\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 296\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mencoding\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 297\u001b[0m \u001b[43m \u001b[49m\u001b[43mlayer\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mlayer\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 298\u001b[0m \u001b[43m \u001b[49m\u001b[43menabled_drivers\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43menabled_drivers\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 299\u001b[0m \u001b[43m \u001b[49m\u001b[43mallow_unsupported_drivers\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mallow_unsupported_drivers\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 300\u001b[0m \u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\n\u001b[1;32m 301\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 302\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m mode \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mw\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[1;32m 303\u001b[0m colxn \u001b[38;5;241m=\u001b[39m Collection(\n\u001b[1;32m 304\u001b[0m path,\n\u001b[1;32m 305\u001b[0m mode,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 314\u001b[0m \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs\n\u001b[1;32m 315\u001b[0m )\n",
"File \u001b[0;32m~/builds/miniforge3/envs/cryocloud/lib/python3.11/site-packages/fiona/collection.py:243\u001b[0m, in \u001b[0;36mCollection.__init__\u001b[0;34m(self, path, mode, driver, schema, crs, encoding, layer, vsi, archive, enabled_drivers, crs_wkt, ignore_fields, ignore_geometry, include_fields, wkt_version, allow_unsupported_drivers, **kwargs)\u001b[0m\n\u001b[1;32m 241\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mmode \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mr\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[1;32m 242\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39msession \u001b[38;5;241m=\u001b[39m Session()\n\u001b[0;32m--> 243\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43msession\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mstart\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 244\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mmode \u001b[38;5;129;01min\u001b[39;00m (\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124ma\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mw\u001b[39m\u001b[38;5;124m\"\u001b[39m):\n\u001b[1;32m 245\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39msession \u001b[38;5;241m=\u001b[39m WritingSession()\n",
"File \u001b[0;32mfiona/ogrext.pyx:588\u001b[0m, in \u001b[0;36mfiona.ogrext.Session.start\u001b[0;34m()\u001b[0m\n",
"File \u001b[0;32mfiona/ogrext.pyx:143\u001b[0m, in \u001b[0;36mfiona.ogrext.gdal_open_vector\u001b[0;34m()\u001b[0m\n",
"\u001b[0;31mDriverError\u001b[0m: /Users/jnywong/Documents/github/CryoCloudWebsite/book/tutorials/book/tutorials/hackweek_kml_jakobshavan.kml: No such file or directory"
]
}
],
"source": [
"# Open KML file for use\n",
"fiona.drvsupport.supported_drivers['LIBKML'] = 'rw' # enable KML support which is disabled by default\n",
Expand Down Expand Up @@ -377,7 +401,7 @@
"outputs": [],
"source": [
"# Load the ATM data into a DataFrame\n",
"atm_file = 'ILATM2_20190506_151600_smooth_nadir3seg_50pt.csv'\n",
"atm_file = os.path.join(parent_dir, 'ILATM2_20190506_151600_smooth_nadir3seg_50pt.csv')\n",
"atm_l2 = pd.read_csv(atm_file)\n",
"\n",
"atm_l2.head()"
Expand Down

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