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3mmaRand committed Oct 24, 2024
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8 changes: 5 additions & 3 deletions r4babs4/week-2/workshop.qmd
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Expand Up @@ -18,7 +18,9 @@ In this workshop you will learn how to analyse some sample flow cytometry data.

# Exercises

## Set up a Project
## Set up

### Make a RStudio Project

🎬 Start RStudio from the Start menu

Expand All @@ -30,7 +32,7 @@ In this workshop you will learn how to analyse some sample flow cytometry data.

🎬 Record what you do and what you find out. All of it! Make notes on the inputs and outputs of each command. This will help you work out problems analysing your own data.

## Load packages
### Load packages

We need three packages for this workshop:

Expand Down Expand Up @@ -220,7 +222,7 @@ fs_clean <- flow_auto_qc(fs,

This is an example report: [ECOLIGreen_TNFAPC flowAI report](sample-QC/ECOLIGreen_TNFAPC_QC.html)

## Plot distributions
### Get a feel of your data: Plot distributions

Plotting the distributions of our variables is very useful for getting an overview of our data. We'll just look at the first flowFrame to get over the principles.

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1 change: 1 addition & 0 deletions r4babs4/week-6/.gitignore
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class-analysis.R
43 changes: 21 additions & 22 deletions renv.lock
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