babs4/week-6 workshop done

3mmaRand · Mar 19, 2024 · e6d128f · e6d128f
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diff --git a/r4babs4/week-1/study_before_workshop.qmd b/r4babs4/week-1/study_before_workshop.qmd
@@ -16,13 +16,13 @@ Entirely optionally, you might want to review some other stage 1 content. You ca
 Stage 1
 
 -   [Data Analysis in R for Becoming a Bioscientist
-    1](https://3mmarand.github.io/R4BABS/r4babs1/r4babs1.html).Core
+    1](../../r4babs1/r4babs1.html).Core
     concepts about scientific computing, types of variable, the role of
     variables in analysis and how to use RStudio to organise analysis
     and import, summarise and plot data.
 
 -   [Data Analysis in R for Becoming a Bioscientist
-    2](https://3mmarand.github.io/R4BABS/r4babs2/r4babs2.html). The
+    2](../../r4babs2/r4babs2.html). The
     logic of hypothesis testing, confidence intervals, what is meant by
     a statistical model, two-sample tests and one- and two-way analysis
     of variance (ANOVA). 

diff --git a/r4babs4/week-6/data-processed/ai_clean_logicle_trans.csv b/r4babs4/week-6/data-processed/ai_clean_logicle_trans.csv
diff --git a/r4babs4/week-6/data-processed_mod/ai_clean_logicle_trans.csv b/r4babs4/week-6/data-processed_mod/ai_clean_logicle_trans.csv
diff --git a/r4babs4/week-6/data-processed_mod/live_labelled.csv b/r4babs4/week-6/data-processed_mod/live_labelled.csv
diff --git a/r4babs4/week-6/figures/1-live-cell-gating.png b/r4babs4/week-6/figures/1-live-cell-gating.png
diff --git a/r4babs4/week-6/figures/apc_distibution_media.png b/r4babs4/week-6/figures/apc_distibution_media.png
diff --git a/r4babs4/week-6/figures_mod/1-live-cell-gating.png b/r4babs4/week-6/figures_mod/1-live-cell-gating.png
diff --git a/r4babs4/week-6/figures_mod/2-alt-tnf-positive-media.png b/r4babs4/week-6/figures_mod/2-alt-tnf-positive-media.png
diff --git a/r4babs4/week-6/figures_mod/2-tnf-positive-media.png b/r4babs4/week-6/figures_mod/2-tnf-positive-media.png
diff --git a/r4babs4/week-6/figures_mod/3a-tnf-positive-media-antibody-overlay.png b/r4babs4/week-6/figures_mod/3a-tnf-positive-media-antibody-overlay.png
diff --git a/r4babs4/week-6/figures_mod/3b-tnf-positive-tnfa-treatment-overlay.png b/r4babs4/week-6/figures_mod/3b-tnf-positive-tnfa-treatment-overlay.png
diff --git a/r4babs4/week-6/figures_mod/5-apc-v-fitc-quadgate_pc.png b/r4babs4/week-6/figures_mod/5-apc-v-fitc-quadgate_pc.png
diff --git a/r4babs4/week-6/figures_mod/6-fitc-positive-fitc-treatment-overlay.png b/r4babs4/week-6/figures_mod/6-fitc-positive-fitc-treatment-overlay.png
diff --git a/r4babs4/week-6/workshop.qmd b/r4babs4/week-6/workshop.qmd