Merge branch 'develop' into pre-commit-ci-update-config

4DNucleome · Jul 24, 2023 · 0af7ebf · 0af7ebf
2 parents a16027e + b03118c
commit 0af7ebf
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Showing 3 changed files with 61 additions and 58 deletions.
diff --git a/requirements/constraints_py3.10.txt b/requirements/constraints_py3.10.txt
@@ -2,13 +2,13 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --allow-unsafe --extra=pyinstaller --extra=pyqt5 --extra=pyqt6 --extra=pyside2 --extra=pyside6 --extra=test --output-file=requirements/constraints_py3.10.txt --resolver=backtracking --strip-extras requirements/version_denylist.txt setup.cfg
+#    pip-compile --allow-unsafe --extra=pyinstaller --extra=pyqt5 --extra=pyqt6 --extra=pyside2 --extra=pyside6 --extra=test --output-file=requirements/constraints_py3.10.txt --strip-extras requirements/version_denylist.txt setup.cfg
 #
 alabaster==0.7.13
     # via sphinx
 altgraph==0.17.3
     # via pyinstaller
-app-model==0.1.4
+app-model==0.2.0
     # via napari
 appdirs==1.4.4
     # via
@@ -29,14 +29,14 @@ build==0.10.0
     # via npe2
 cachey==0.2.1
     # via napari
-certifi==2023.5.7
+certifi==2023.7.22
     # via
     #   napari
     #   requests
     #   sentry-sdk
 charset-normalizer==3.2.0
     # via requests
-click==8.1.4
+click==8.1.6
     # via
     #   dask
     #   typer
@@ -48,7 +48,7 @@ coverage==7.2.7
     # via pytest-cov
 czifile==2019.7.2
     # via PartSeg (setup.cfg)
-dask==2023.7.0
+dask==2023.7.1
     # via napari
 debugpy==1.6.7
     # via ipykernel
@@ -80,7 +80,7 @@ hsluv==5.0.3
     # via vispy
 idna==3.4
     # via requests
-imagecodecs==2023.7.4
+imagecodecs==2023.7.10
     # via PartSeg (setup.cfg)
 imageio==2.31.1
     # via
@@ -115,9 +115,9 @@ jinja2==3.1.2
     # via
     #   numpydoc
     #   sphinx
-jsonschema==4.18.0
+jsonschema==4.18.4
     # via napari
-jsonschema-specifications==2023.6.1
+jsonschema-specifications==2023.7.1
     # via jsonschema
 jupyter-client==8.3.0
     # via
@@ -179,7 +179,7 @@ networkx==3.1
     # via scikit-image
 nme==0.1.8
     # via PartSeg (setup.cfg)
-npe2==0.7.0
+npe2==0.7.2
     # via
     #   -r requirements/version_denylist.txt
     #   napari
@@ -246,7 +246,7 @@ pillow==10.0.0
     #   scikit-image
 pint==0.22
     # via napari
-platformdirs==3.8.1
+platformdirs==3.9.1
     # via
     #   jupyter-core
     #   pooch
@@ -289,7 +289,7 @@ pygments==2.15.1
     #   superqt
 pyinstaller==5.13.0
     # via PartSeg (setup.cfg)
-pyinstaller-hooks-contrib==2023.5
+pyinstaller-hooks-contrib==2023.6
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -343,13 +343,11 @@ python-dateutil==2.8.2
     # via
     #   jupyter-client
     #   pandas
-pytomlpp==1.0.13
-    # via npe2
 pytz==2023.3
     # via pandas
 pywavelets==1.4.1
     # via scikit-image
-pyyaml==6.0
+pyyaml==6.0.1
     # via
     #   dask
     #   napari
@@ -374,7 +372,7 @@ qtpy==2.3.1
     #   qtawesome
     #   qtconsole
     #   superqt
-referencing==0.29.1
+referencing==0.30.0
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -385,7 +383,7 @@ requests==2.31.0
     #   sphinx
 rich==13.4.2
     # via npe2
-rpds-py==0.8.10
+rpds-py==0.9.2
     # via
     #   jsonschema
     #   referencing
@@ -398,7 +396,7 @@ scipy==1.11.1
     #   PartSeg (setup.cfg)
     #   napari
     #   scikit-image
-sentry-sdk==1.27.1
+sentry-sdk==1.28.1
     # via PartSeg (setup.cfg)
 shiboken2==5.15.2.1
     # via pyside2
@@ -441,7 +439,7 @@ superqt==0.4.1
     #   napari
 sympy==1.12
     # via PartSeg (setup.cfg)
-tifffile==2023.7.4
+tifffile==2023.7.18
     # via
     #   PartSeg (setup.cfg)
     #   czifile
@@ -452,8 +450,11 @@ tomli==2.0.1
     # via
     #   build
     #   coverage
+    #   npe2
     #   pyproject-hooks
     #   pytest
+tomli-w==1.0.0
+    # via npe2
 toolz==0.12.0
     # via
     #   dask
@@ -490,7 +491,7 @@ typing-extensions==4.7.1
     #   typer
 tzdata==2023.3
     # via pandas
-urllib3==2.0.3
+urllib3==2.0.4
     # via
     #   requests
     #   sentry-sdk
@@ -507,7 +508,7 @@ xlrd==2.0.1
     # via PartSeg (setup.cfg)
 xlsxwriter==3.1.2
     # via PartSeg (setup.cfg)
-zipp==3.16.0
+zipp==3.16.2
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:

diff --git a/requirements/constraints_py3.8.txt b/requirements/constraints_py3.8.txt
@@ -2,13 +2,13 @@
 # This file is autogenerated by pip-compile with Python 3.8
 # by the following command:
 #
-#    pip-compile --allow-unsafe --extra=pyinstaller --extra=pyqt5 --extra=pyqt6 --extra=pyside2 --extra=pyside6 --extra=test --output-file=requirements/constraints_py3.8.txt --resolver=backtracking --strip-extras requirements/version_denylist.txt setup.cfg
+#    pip-compile --allow-unsafe --extra=pyinstaller --extra=pyqt5 --extra=pyqt6 --extra=pyside2 --extra=pyside6 --extra=test --output-file=requirements/constraints_py3.8.txt --strip-extras requirements/version_denylist.txt setup.cfg
 #
 alabaster==0.7.13
     # via sphinx
 altgraph==0.17.3
     # via pyinstaller
-app-model==0.1.4
+app-model==0.2.0
     # via napari
 appdirs==1.4.4
     # via
@@ -29,14 +29,14 @@ build==0.10.0
     # via npe2
 cachey==0.2.1
     # via napari
-certifi==2023.5.7
+certifi==2023.7.22
     # via
     #   napari
     #   requests
     #   sentry-sdk
 charset-normalizer==3.2.0
     # via requests
-click==8.1.4
+click==8.1.6
     # via
     #   dask
     #   typer
@@ -122,9 +122,9 @@ jinja2==3.1.2
     # via
     #   numpydoc
     #   sphinx
-jsonschema==4.18.0
+jsonschema==4.18.4
     # via napari
-jsonschema-specifications==2023.6.1
+jsonschema-specifications==2023.7.1
     # via jsonschema
 jupyter-client==8.3.0
     # via
@@ -186,7 +186,7 @@ networkx==3.1
     # via scikit-image
 nme==0.1.8
     # via PartSeg (setup.cfg)
-npe2==0.7.0
+npe2==0.7.2
     # via
     #   -r requirements/version_denylist.txt
     #   napari
@@ -255,7 +255,7 @@ pint==0.21.1
     # via napari
 pkgutil-resolve-name==1.3.10
     # via jsonschema
-platformdirs==3.8.1
+platformdirs==3.9.1
     # via
     #   jupyter-core
     #   pooch
@@ -298,7 +298,7 @@ pygments==2.15.1
     #   superqt
 pyinstaller==5.13.0
     # via PartSeg (setup.cfg)
-pyinstaller-hooks-contrib==2023.5
+pyinstaller-hooks-contrib==2023.6
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -352,15 +352,13 @@ python-dateutil==2.8.2
     # via
     #   jupyter-client
     #   pandas
-pytomlpp==1.0.13
-    # via npe2
 pytz==2023.3
     # via
     #   babel
     #   pandas
 pywavelets==1.4.1
     # via scikit-image
-pyyaml==6.0
+pyyaml==6.0.1
     # via
     #   dask
     #   napari
@@ -385,7 +383,7 @@ qtpy==2.3.1
     #   qtawesome
     #   qtconsole
     #   superqt
-referencing==0.29.1
+referencing==0.30.0
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -396,7 +394,7 @@ requests==2.31.0
     #   sphinx
 rich==13.4.2
     # via npe2
-rpds-py==0.8.10
+rpds-py==0.9.2
     # via
     #   jsonschema
     #   referencing
@@ -409,7 +407,7 @@ scipy==1.10.1
     #   PartSeg (setup.cfg)
     #   napari
     #   scikit-image
-sentry-sdk==1.27.1
+sentry-sdk==1.28.1
     # via PartSeg (setup.cfg)
 shiboken2==5.15.2.1
     # via pyside2
@@ -452,7 +450,7 @@ superqt==0.4.1
     #   napari
 sympy==1.12
     # via PartSeg (setup.cfg)
-tifffile==2023.7.4
+tifffile==2023.7.10
     # via
     #   PartSeg (setup.cfg)
     #   czifile
@@ -463,8 +461,11 @@ tomli==2.0.1
     # via
     #   build
     #   coverage
+    #   npe2
     #   pyproject-hooks
     #   pytest
+tomli-w==1.0.0
+    # via npe2
 toolz==0.12.0
     # via
     #   dask
@@ -502,7 +503,7 @@ typing-extensions==4.7.1
     #   typer
 tzdata==2023.3
     # via pandas
-urllib3==2.0.3
+urllib3==2.0.4
     # via
     #   requests
     #   sentry-sdk
@@ -519,7 +520,7 @@ xlrd==2.0.1
     # via PartSeg (setup.cfg)
 xlsxwriter==3.1.2
     # via PartSeg (setup.cfg)
-zipp==3.16.0
+zipp==3.16.2
     # via
     #   importlib-metadata
     #   importlib-resources