Fix sample job config for old Galaxy 19.01

The version of the drmaa library used by Galaxy 19.01 does not yet support the --cpus-per-task option. Compare: natefoo/slurm-drmaa#2
AG-Boerries · Sep 23, 2020 · 3837591 · 3837591
1 parent 4490c22
commit 3837591
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/job_conf.xml.sample b/job_conf.xml.sample
@@ -152,17 +152,17 @@
         <destination id="slurm-4c" runner="slurm">
             <env file="/galaxy_venv/bin/activate"/>
             <param id="enabled" from_environ="GALAXY_RUNNERS_ENABLE_SLURM">true</param>
-            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--ntasks=1 --cpus-per-task=4</param>
+            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--nodes=1=1--ntasks=4 --ntasks-per-node=4</param>
         </destination>
         <destination id="slurm-6c" runner="slurm">
             <env file="/galaxy_venv/bin/activate"/>
             <param id="enabled" from_environ="GALAXY_RUNNERS_ENABLE_SLURM">true</param>
-            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--ntasks=1 --cpus-per-task=6</param>
+            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--nodes=1=1 --ntasks=6 --ntasks-per-node=6</param>
         </destination>
         <destination id="slurm-8c" runner="slurm">
             <env file="/galaxy_venv/bin/activate"/>
             <param id="enabled" from_environ="GALAXY_RUNNERS_ENABLE_SLURM">true</param>
-            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--ntasks=1 --cpus-per-task=8</param>
+            <param id="nativeSpecification" from_environ="NATIVE_SPEC">--nodes=1=1 --ntasks=8 --ntasks-per-node=8</param>
         </destination>
     </destinations>
     <tools>
@@ -177,3 +177,4 @@
     <limits>
     </limits>
 </job_conf>
+