Add correct version of rere

Exec/RegTests/EB-C1/eb-symmetry.inp

@@ -45,7 +45,7 @@ amr.max_level       = 0       # maximum level number allowed
 #amr.max_level       = 1       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 amr.n_error_buf     = 2 2 2 2 # number of buffer cells in error est
 

Exec/RegTests/EB-C1/ebmms-1.inp

@@ -45,7 +45,7 @@ amr.max_level       = 0       # maximum level number allowed
 #amr.max_level       = 1       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 64
 amr.n_error_buf     = 2 2 2 2 # number of buffer cells in error est
 

Exec/RegTests/EB-C1/example.inp

@@ -46,7 +46,7 @@ amr.max_level       = 0       # maximum level number allowed
 #amr.max_level       = 1       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 64
 amr.n_error_buf     = 2 2 2 2 # number of buffer cells in error est
 

Exec/RegTests/EB-C11/eb-c11.inp

@@ -42,7 +42,7 @@ amr.data_log         = datlog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 64
 amr.n_error_buf     = 2 2 2 2 # number of buffer cells in error est
 

Exec/RegTests/EB-C11/example.inp

@@ -42,7 +42,7 @@ amr.data_log         = datlog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 64
 amr.n_error_buf     = 2 2 2 2 # number of buffer cells in error est
 

Exec/RegTests/EB-C12/eb-c12.inp

@@ -47,7 +47,7 @@ amr.data_log         = datlog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C12/example.inp

@@ -46,7 +46,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C13/example.inp

@@ -53,7 +53,7 @@ amr.data_log         = datlog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C3/eb-c3.inp

@@ -49,7 +49,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C3/example.inp

@@ -49,7 +49,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C4-5/eb-c4.inp

@@ -53,7 +53,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C4-5/eb-c5.inp

@@ -52,7 +52,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C4-5/example.inp

@@ -53,7 +53,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C8/eb-c8.inp

@@ -40,8 +40,10 @@ amr.data_log         = datlog
 amr.max_level       = 1       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
+amr.n_error_buf     = 0 0 0 0 # number of buffer cells in error est
 amr.blocking_factor = 8       # block factor in grid generation
-amr.max_grid_size   = 32
+amr.max_grid_size   = 64
+amr.grid_eff        = 0.99
 
 # CHECKPOINT FILES
 amr.checkpoint_files_output = 0
@@ -75,13 +77,10 @@ tagging.max_dengrad_lev = 3
 tagging.tempgrad = 50.0
 tagging.max_tempgrad_lev = 3
 
-eb2.geom_type = "extruded_triangles"
-extruded_triangles.num_tri = 2
-extruded_triangles.tri_0_point_0 = -20.0 -11.662475437630437 0.0
-extruded_triangles.tri_0_point_1 = 22.0 -20.0 0.0
-extruded_triangles.tri_0_point_2 = 22.0 12.586235868333839 0.0
-
-extruded_triangles.tri_1_point_0 = -20.0 -11.431535329954588 0.0
-extruded_triangles.tri_1_point_1 = 22.0 12.817175976009688 0.0
-extruded_triangles.tri_1_point_2 = -20.0 20.0 0.0
-ebd.boundary_grad_stencil_type = 0
+eb2.geom_type = "rotated_box"
+eb2.box_lo = -10.0 -0.172 -10.0
+eb2.box_hi = 10.0 0.172 10.0
+eb2.box_rotation = 30.0
+eb2.box_rotation_axe = 2
+eb2.box_has_fluid_inside = 1
+ebd.boundary_grad_stencil_type = 0

Exec/RegTests/EB-C8/example.inp

@@ -73,13 +73,10 @@ tagging.dengrad = 4e-5
 tagging.max_denerr_lev = 3
 tagging.max_dengrad_lev = 3
 
-eb2.geom_type = "extruded_triangles"
-extruded_triangles.num_tri = 2
-extruded_triangles.tri_0_point_0 = -20.0 -11.662475437630437 0.0
-extruded_triangles.tri_0_point_1 = 22.0 -20.0 0.0
-extruded_triangles.tri_0_point_2 = 22.0 12.586235868333839 0.0
-
-extruded_triangles.tri_1_point_0 = -20.0 -11.431535329954588 0.0
-extruded_triangles.tri_1_point_1 = 22.0 12.817175976009688 0.0
-extruded_triangles.tri_1_point_2 = -20.0 20.0 0.0
-ebd.boundary_grad_stencil_type = 0
+eb2.geom_type = "rotated_box"
+eb2.box_lo = -10.0 -0.172 -10.0
+eb2.box_hi = 10.0 0.172 10.0
+eb2.box_rotation = 30.0
+eb2.box_rotation_axe = 2
+eb2.box_has_fluid_inside = 1
+ebd.boundary_grad_stencil_type = 0

Exec/RegTests/EB-C8/simple-advection.inp

@@ -41,7 +41,7 @@ amr.data_log         = datlog extremalog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2 2 2 2 # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES
@@ -78,13 +78,5 @@ tagging.dengrad = 4e-5
 tagging.max_denerr_lev = 3
 tagging.max_dengrad_lev = 3
 
-# eb2.geom_type = "extruded_triangles"
-# extruded_triangles.num_tri = 2
-# extruded_triangles.tri_0_point_0 = -20.0 -11.662475437630437 0.0
-# extruded_triangles.tri_0_point_1 = 22.0 -20.0 0.0
-# extruded_triangles.tri_0_point_2 = 22.0 12.586235868333839 0.0
-# extruded_triangles.tri_1_point_0 = -20.0 -11.431535329954588 0.0
-# extruded_triangles.tri_1_point_1 = 22.0 12.817175976009688 0.0
-# extruded_triangles.tri_1_point_2 = -20.0 20.0 0.0
 ebd.boundary_grad_stencil_type = 0
 eb2.geom_type = "all_regular"

Exec/RegTests/EB-C9/eb-c9.inp

@@ -47,7 +47,7 @@ amr.data_log         = datlog
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/EB-C9/example.inp

@@ -46,7 +46,7 @@ amr.v                = 1       # verbosity in Amr.cpp
 amr.max_level       = 0       # maximum level number allowed
 amr.ref_ratio       = 2 2 2 2 # refinement ratio
 amr.regrid_int      = 2       # how often to regrid
-amr.blocking_factor = 4       # block factor in grid generation
+amr.blocking_factor = 8       # block factor in grid generation
 amr.max_grid_size   = 32
 
 # CHECKPOINT FILES

Exec/RegTests/Sod/sod-3.inp

@@ -81,8 +81,6 @@ tagging.min_eb_refine_lev = 0
 
 tagging.refinement_indicators = box
 tagging.box.in_box_lo =  0.6  0.125  0.125
-#tagging.box.in_box_lo =  0.6  0.0  0.125
-#tagging.box.in_box_hi =  0.8  0.25  0.25
 tagging.box.in_box_hi =  0.8  0.22  0.25
 
 # EB

Exec/RegTests/Sod/sod-4.inp

@@ -0,0 +1,98 @@
+# ------------------  INPUTS TO MAIN PROGRAM  -------------------
+max_step = 100000
+stop_time =  0.2
+
+# PROBLEM SIZE & GEOMETRY
+geometry.is_periodic = 0 0 0
+geometry.coord_sys   = 0  # 0 => cart, 1 => RZ  2=>spherical
+geometry.prob_lo     =  0     0     0
+geometry.prob_hi     =  1.0     1.0 1.0
+amr.n_cell           = 32 32 32
+
+# >>>>>>>>>>>>>  BC KEYWORDS <<<<<<<<<<<<<<<<<<<<<<
+# Interior, UserBC, Symmetry, SlipWall, NoSlipWall
+# >>>>>>>>>>>>>  BC KEYWORDS <<<<<<<<<<<<<<<<<<<<<<
+pelec.lo_bc       = "SlipWall"   "SlipWall"   "SlipWall"
+pelec.hi_bc       = "SlipWall"   "SlipWall"   "SlipWall"
+
+# WHICH PHYSICS
+pelec.do_hydro = 1
+pelec.do_mol = 1
+pelec.diffuse_vel = 0
+pelec.diffuse_temp = 0
+pelec.diffuse_spec = 0
+pelec.do_react = 0
+
+# TIME STEP CONTROL
+pelec.cfl            = 0.3     # cfl number for hyperbolic system
+pelec.init_shrink    = 0.1     # scale back initial timestep
+pelec.change_max     = 1.05    # scale back initial timestep
+pelec.dt_cutoff      = 5.e-20  # level 0 timestep below which we halt
+
+# DIAGNOSTICS & VERBOSITY
+pelec.sum_interval   = 1       # timesteps between computing mass
+pelec.v              = 1       # verbosity in PeleC.cpp
+amr.v                = 1       # verbosity in Amr.cpp
+amr.data_log         = datlog
+
+# REFINEMENT / REGRIDDING
+amr.max_level       = 1       # maximum level number allowed
+amr.ref_ratio       = 2 2 2 2 # refinement ratio
+amr.regrid_int      = 2 2 2 2 # how often to regrid
+amr.blocking_factor = 16      # block factor in grid generation
+amr.max_grid_size   = 64
+amr.n_error_buf     = 0 0 0 0 # number of buffer cells in error est
+
+# CHECKPOINT FILES
+amr.checkpoint_files_output = 0
+amr.check_file      = chk        # root name of checkpoint file
+amr.check_int       = 100        # number of timesteps between checkpoints
+
+# PLOTFILES
+amr.plot_files_output = 1
+amr.plot_file       = plt        # root name of plotfile
+amr.plot_int        = 1        # number of timesteps between plotfiles
+amr.plot_vars  =  density Temp
+amr.derive_plot_vars = x_velocity y_velocity z_velocity magvel magvort pressure
+
+# PROBLEM PARAMETERS
+prob.p_l = 1.0
+prob.u_l = 0.0
+prob.rho_l = 1.0
+prob.p_r = 0.1
+prob.u_r = 0.0
+prob.rho_r = 0.125
+prob.idir = 1
+prob.frac = 0.5
+
+# TAGGING
+tagging.denerr = 3
+tagging.dengrad = 0.01
+tagging.max_denerr_lev = 0
+tagging.max_dengrad_lev = 0
+tagging.presserr = 3
+tagging.pressgrad = 0.01
+tagging.max_presserr_lev = 0
+tagging.max_pressgrad_lev = 0
+tagging.max_vfracerr_lev = 0
+tagging.eb_refine_type = "adaptive"
+tagging.max_eb_refine_lev = 0
+tagging.min_eb_refine_lev = 0
+
+tagging.refinement_indicators = box
+tagging.box.in_box_lo =  0.55 0.5  0.3
+tagging.box.in_box_hi =  0.85 0.65 0.7
+
+# EB
+eb2.geom_type = sphere
+eb2.sphere_radius = 0.125
+eb2.sphere_center = 0.7 0.5 0.5
+eb2.sphere_has_fluid_inside = 0
+pelec.eb_boundary_T = 300.
+pelec.eb_isothermal = 1
+ebd.boundary_grad_stencil_type = 0
+pelec.eb_srd_max_order = 2
+
+amrex.fpe_trap_invalid = 1
+amrex.fpe_trap_zero = 1
+amrex.fpe_trap_overflow = 1