add SimpleITK.Image to ANTsImage conversion (#726) #325
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| name: ci-pytest | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| env: | |
| # Updates or changes to this, or the runner OS or arch will invalidate the cache | |
| python_version: "3.10" # Python version to use for testing - update when needed | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| # Default shell needs to be bash for conda | |
| # https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#important | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@030178870c779d9e5e1b4e563269f3aa69b04081 # v3.0.3, devs recommend using hash | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ env.python_version }} | |
| auto-update-conda: true | |
| activate-environment: "test-env" | |
| - name: Configure Conda to use only .tar.bz2 | |
| run: | | |
| conda config --set use_only_tar_bz2 true | |
| - name: Checkout code | |
| uses: actions/checkout@v4 # Checkout PR code to 'antspy-pr' | |
| with: | |
| path: antspy-pr | |
| - name: Install dependencies and ANTsPy from PR | |
| run: | | |
| conda create -n antspy-env python=${{ env.python_version }} -y | |
| conda activate antspy-env | |
| conda install -c conda-forge coverage | |
| conda info | |
| pip install ./antspy-pr | |
| conda list | |
| - name: Run tests | |
| run: | | |
| conda activate antspy-env | |
| bash antspy-pr/tests/run_tests.sh -c | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| files: antspy-pr/tests/coverage.xml |