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Update README.md
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ASanchez-Tojar authored May 19, 2020
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Expand Up @@ -16,7 +16,7 @@ The supplementary information is available at: [supplementary information](https
- `Code_policies.docx`: word document listing the journals with code-sharing policies in March 2020 (more in [supplementary information](https://asanchez-tojar.github.io/code_in_ecology/supporting_information.html)) and a copy-paste of the information provided in the author guidelines/journal policies section of each journal.
- `Data_Feb_2020_V8.xlsx`: excel document with three sheets containing the data extracted during the review process, including the data regarding those articles that were double-checked by a second observer: (i) Dataset_2015_16: data for the 2015-2016 period (extracted by AC, double-checked by AST); (ii) Dataset_2018_19: data for the 2018-2019 period (extracted by AST, double-checked by AC); and (iii) explanations: metadata provided information about the variables extracted in the first two sheets.
- `Updated_Table_Mislan_2020_v2.xlsx`: excel sheet containing data about the type of code-sharing policies of each of the 96 journals reviewed in March 2020. The list of journals is based on that compiled by [Mislan et al. 2016](https://doi.org/10.1016/j.tree.2015.11.006).
- `code_availability_full_and_clean.csv`: this is the **final dataset** used for the analyses conducted in this study, and this dataset is the output of the script [`003_data_cleaning_and_standardization.R`](https://github.com/ASanchez-Tojar/code_in_ecology/blob/master/003_data_cleaning_and_standardization.R), which imports the file `Updated_Table_Mislan_2020_v2.xlsx`, cleans it, and create new variables for the analyses.
- `code_availability_full_and_clean.csv`: this is the **final dataset** used for the analyses conducted in this study, and this dataset is the output of the script [`003_data_cleaning_and_standardization.R`](https://github.com/ASanchez-Tojar/code_in_ecology/blob/master/003_data_cleaning_and_standardization.R), which imports the file `Updated_Table_Mislan_2020_v2.xlsx`, cleans it, and creates new variables for the analyses.
- `journal_percentages.csv`: small dataset created by the script [`005_supporting_information.Rmd`](https://github.com/ASanchez-Tojar/code_in_ecology/blob/master/005_supporting_information.Rmd) and containing each of the 14 journals reviewed, the number of articles reviewed, the number of articles sharing at least some code, and the percentage of articles sharing code for each journal. This dataset is used to create figure 2, which was originally included in the supplementary information but now available in the main text.
- `journal_info_v2.csv`: small dataset containing the code-sharing policy and name abbrevation of each of the 14 journals from which we calculated code-sharing practices. Note that the code-sharing policy of this journals is also available in the file `Updated_Table_Mislan_2020_v2.xlsx`.

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