split publications and software to separate tabs

_freeze/software/execute-results/html.json

@@ -0,0 +1,15 @@
+{
+  "hash": "bff3dfe78cb2c1efb6c461dc8ba2afc9",
+  "result": {
+    "engine": "knitr",
+    "markdown": "---\ntitle: \"Software, Data, and Research Compendia\"\nformat:\n  html:\n    from: markdown+autolink_bare_uris\n---\n\n```{=html}\n<!--\nBecause the rendered site is frozen, an update to the source code (i.e. this document) is required to update the page.  After adding a publication to Zotero and syncing, edit this comment (add a space or something), `quarto_render()`, then push to GitHub to update the website. ||||||||\n-->\n```\n\n<div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b>, Orians, C. M., Schweiger, R., Dukes, J. S., &amp; M&#xFC;ller, C. (2024). <i>Code for&#xA0; &#x201C;Combined impacts of prolonged drought and warming on plant size and foliar chemistry&#x201D;</i> (v1.0.0). Zenodo. https://doi.org/10.5281/zenodo.11217919</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\">Riemer, K., <b>Scott, E. R.</b>, &amp; Meredith, L. K. (2023). <i>volcalc: Calculate Volatility of Chemical Compounds</i> (v2.1.1). Zenodo. https://doi.org/10.5281/zenodo.10392821</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\">Weiss, J., &amp; <b>Scott, E. R.</b> (2023). <i>azmetr: Access Arizona weather data from the AZMet API</i> (v0.2.1). Zenodo. https://doi.org/10.5281/zenodo.10044639</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\">Ewinghill, T., <b>Scott, E. R.</b>, &amp; Guo, J. (2023). <i>Code for &#x201C;University of Arizona Cooperative Extension Needs Assessment 2022 Dashboard.&#x201D;</i> Zenodo. https://doi.org/10.5281/zenodo.7931082</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b>, Jackson, E. D., Casolaro, C., Nebeker, R. S., Dukes, J. S., Griffin, T., &amp; Orians, C. M. (2023). <i>Code and data from: Current and legacy effects of precipitation treatments on growth and nutrition in contrasting crops</i> (v1.0). Zenodo. https://doi.org/10.5281/zenodo.7817780</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b>, &amp; Bruna, E. M. (2022). <i>bdffpRain: Rain gauge data from the Biological Dynamics of Forest Fragments project</i> (v0.0.1). Zenodo. https://doi.org/10.5281/zenodo.6557721</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2022). <i>BrunaLab/bdffp-cmip6: Downloading and wrangling CMIP6 model output for the Biological Dynamics of Forest Fragments Project region</i> (v1.0.1). Zenodo. https://doi.org/10.5281/zenodo.6558264</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b>, &amp; Bruna, E. M. (2021). <i>BrunaLab/HeliconiaDemography: Data and Code for: Scott ER, Uriarte M, Bruna EM (2021) Delayed effects of climate on vital rates lead to demographic divergence in Amazonian forest fragments. Global Change Biology.</i> (v1.0). Zenodo. https://doi.org/10.5281/zenodo.5608621</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2021). <i>bumbl: Tools for modeling bumblebee colony growth and decline</i> (v1.0.1). https://doi.org/10.5281/ZENODO.4545782</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2021). <i>Aariq/leafhopper-observational: Research compendium for &#x201C;Differing non-linear, lagged effects of temperature and precipitation on an insect herbivore and its host plant&#x201D;</i> (v2.0.0). Zenodo. https://doi.org/10.5281/zenodo.4557659</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2021). <i>Aariq/PCA-vs-PLS: Research compendium for &#x201C;Using the right tool for the job: the difference between unsupervised and supervised analyses of multivariate ecological data&#x201D;</i> (v2.0.0). Zenodo. https://doi.org/10.5281/zenodo.4557672</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2020). <i>Data and analysis for: Changes in tea plant secondary metabolite profiles as a function of leafhopper density and damage</i> (v1.1.2). Zenodo. https://doi.org/10.5281/zenodo.3706927</div>\n</div> <div class=\"csl-bib-body\" style=\"line-height: 2; padding-left: 1em; text-indent:-1em;\">\n  <div class=\"csl-entry\"><b>Scott, E. R.</b> (2019). <i>holodeck: A Tidy Interface for Simulating Multivariate Data</i>. https://doi.org/10.5281/zenodo.2641200</div>\n</div>\n",
+    "supporting": [],
+    "filters": [
+      "rmarkdown/pagebreak.lua"
+    ],
+    "includes": {},
+    "engineDependencies": {},
+    "preserve": {},
+    "postProcess": true
+  }
+}

_quarto.yml

@@ -31,6 +31,8 @@ website:
         text: Projects
       - href: publications.qmd
         text: Publications
+      - href: software.qmd
+        text: Code
       - href: Eric Scott cv.pdf
         text: CV
     right:

publications.qmd

@@ -7,7 +7,7 @@ format:
 
 ```{=html}
 <!--
-Because the rendered site is frozen, an update to the source code (i.e. this document) is required to update the page.  After adding a publication to Zotero and syncing, edit this comment (add a space or something), `quarto_render()`, then push to GitHub to update the website. ||||||||
+Because the rendered site is frozen, an update to the source code (i.e. this document) is required to update the page.  After adding a publication to Zotero and syncing, edit this comment (add a space or something), `quarto_render()`, then push to GitHub to update the website. |||||||||
 -->
 ```
 ```{r}
@@ -22,7 +22,7 @@ req <-
     include = "bib",
     sort = "date",
     style = "journal-of-ecology",
-    itemType = "-attachment || note"
+    itemType = "journalArticle || bookSection || book"
   ) |>
   req_headers(`Zotero-API-Key` = Sys.getenv("ZOTERO_API_KEY")) |>
   req_url_path("users", "6720834", "publications", "items") |> 

software.qmd

@@ -0,0 +1,42 @@
+---
+title: "Software, Data, and Research Compendia"
+format:
+  html:
+    from: markdown+autolink_bare_uris
+---
+
+```{=html}
+<!--
+Because the rendered site is frozen, an update to the source code (i.e. this document) is required to update the page.  After adding a publication to Zotero and syncing, edit this comment (add a space or something), `quarto_render()`, then push to GitHub to update the website. ||||||||
+-->
+```
+```{r}
+#| echo: false
+#| output: asis
+library(httr2)
+library(stringr)
+req <-
+  request("https://api.zotero.org") |>
+  req_url_query(
+    v = 3,
+    include = "bib",
+    sort = "date",
+    style = "journal-of-ecology",
+    itemType = "dataset || computerProgram"
+  ) |>
+  req_headers(`Zotero-API-Key` = Sys.getenv("ZOTERO_API_KEY")) |>
+  req_url_path("users", "6720834", "publications", "items") |> 
+  req_retry()
+
+resp <- 
+  req |> 
+  req_perform()
+
+resp |> 
+  resp_body_json() |>  
+  purrr::map("bib") |> 
+  unlist() |> 
+  # Bold my name 
+  str_replace("(Scott, E\\. R\\.)", '<b>\\1</b>') |> 
+  cat()
+```