README

Summary

• This repository provides tools for the calculation of Diffusion Maps.
• The current implementation is a python wrapper for diffusionMap Package written in R. The python package rpy2 (http://rpy.sourceforge.net) is used to run R within python. Reference for the R diffusionMap package is found at http://cran.r-project.org/web/packages/diffusionMap/index.html.
• The only python call available is the function diffuse.diffuse, which correponds to the R diffuse function.
• diffuse.test.py is provided as an example of the usage of diffuse.diffuse

Who do I talk to?

• Alex Kim (agkim@lbl.gov)