AlexKnyshov / main_repo Public

primary collection of (mostly) utility scripts

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Name		Name	Last commit message	Last commit date
Latest commit History 545 Commits
Cpp_dev		Cpp_dev
R		R
dipso_AHE		dipso_AHE
phylo_info		phylo_info
primer-aligner		primer-aligner
py3		py3
AEC_database_report.py		AEC_database_report.py
UPhO_parser.py		UPhO_parser.py
UPhO_prep_trees.sh		UPhO_prep_trees.sh
align.sh		align.sh
align_editor.py		align_editor.py
bootrep.py		bootrep.py
bootsupport.py		bootsupport.py
capture_assembly_pipeline.sh		capture_assembly_pipeline.sh
collapse_nodes.py		collapse_nodes.py
concat.py		concat.py
customtrim.py		customtrim.py
endbite.py		endbite.py
fasextr.py		fasextr.py
fconv.py		fconv.py
get_seq_by_order.py		get_seq_by_order.py
interlace_fastq.py		interlace_fastq.py
merge_loci.py		merge_loci.py
merge_taxa.py		merge_taxa.py
missing_data.py		missing_data.py
nhPhyml.sh		nhPhyml.sh
pairwise_dist_calc.py		pairwise_dist_calc.py
probe_cds.py		probe_cds.py
readme.md		readme.md
reformat_UCE_probes.py		reformat_UCE_probes.py
reformat_UCE_probes_phyluce.py		reformat_UCE_probes_phyluce.py
relabelPhylo.py		relabelPhylo.py
removeDupl.py		removeDupl.py
removeHyphen.py		removeHyphen.py
removeR.py		removeR.py
removeTaxa.py		removeTaxa.py
revcom.py		revcom.py
sliding_trimmer.py		sliding_trimmer.py
split_fasta.py		split_fasta.py
split_phy.py		split_phy.py
subset_positions.py		subset_positions.py
susbet_by_length.py		susbet_by_length.py
taxGC.py		taxGC.py
taxalist.py		taxalist.py
taxanumber.py		taxanumber.py
taxon_regroup.py		taxon_regroup.py
taxon_resampler.py		taxon_resampler.py
timedif.py		timedif.py
trans-rename.sh		trans-rename.sh
translator.py		translator.py
treecompare.py		treecompare.py