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final.final readme (#1731)
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sjspielman committed Apr 5, 2023
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Note that this consumes `input/` files to create certain tables.
- `util/BS_F0GNWEJJ_genomic_investigation.Rmd` which performs an investigation into a particular hypermutator sample of interest present in Table 2.
- `copy-zenodo-tables.sh`, which will copy any figure data tables exported within `analysis/` modules into `zenodo-upload/`.
- `tabulate-molecular-alterations.R`, which creates the table `zenodo-upload/openpbta-molecular-alterations.csv`.

## Manuscript tables

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Files in this directory are named as: `figure-<figure number><figure panel>-data.csv` (or `.csv.gz` if compressed.)
For example, `figure-3a-data.csv` contains data for Figure 3A.
Please refer to the documentation in `zenodo-upload/README.md` for more details about specific files included and their generation.

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