V7 Release

[yuankunzhu]

Purpose/implementation

data release updates for v7 🎃

• changes:
  • update molecular_subtype for the clinical file
  • Add ControlFreeC CNV merged TSV file. data format
  • Add ControlFreeC ploidy to clinical file.
  • Add sample lists for analyses requiring unique patient specimens. issues/155
    • independent-specimens.wgs.primary-plus.tsv
    • independent-specimens.wgswxs.primary-plus.tsv
    • independent-specimens.wgs.primary.tsv
    • independent-specimens.wgswxs.primary.tsv
      ​

Issue/Caveats

Directions for reviewers

changed on release notes and download script.

• file content updated for (added ControlFreeC ploidy and molecular_subtype)
  • pbta-histologies.tsv
• add file
  • independent-specimens.wgs.primary-plus.tsv
  • independent-specimens.wgs.primary.tsv
  • independent-specimens.wgswxs.primary-plus.tsv
  • independent-specimens.wgswxs.primary.tsv
  • pbta-cnv-controlfreec.tsv.gz

Results

Docker and continuous integration

[jaclyn-taroni]

I'll let you merge this one @jharenza !