Merge pull request #224 from AllenInstitute/dev #26
Workflow file for this run
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| name: Python Package using Conda | |
| on: [push] | |
| jobs: | |
| build-windows: | |
| runs-on: windows-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| C:\Miniconda\condabin\conda.bat install tqdm openjpeg ruamel.yaml | |
| python -m pip install --upgrade pip | |
| pip install -r test_requirements.txt -U | |
| pip install -r requirements.txt -U | |
| pip install -e . | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest tests/ | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| conda install tqdm openjpeg ruamel.yaml | |
| python -m pip install --upgrade pip | |
| pip install -r test_requirements.txt -U | |
| pip install -r requirements.txt -U | |
| pip install -e . | |
| - name: Lint with flake8 | |
| run: | | |
| # flake8 already installed via test_requirements.txt | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest tests/ | |
| build-mac: | |
| runs-on: macos-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| cache: 'pip' | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| - name: Install dependencies | |
| run: | | |
| conda install tqdm openjpeg ruamel.yaml | |
| brew install hdf5 | |
| export HDF5_DIR="$(brew --prefix hdf5)" | |
| python -m pip install --upgrade pip | |
| pip install -r test_requirements.txt -U --disable-pip-version-check | |
| pip install -r requirements.txt -U --disable-pip-version-check | |
| pip install -e . --disable-pip-version-check | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest tests/ |