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v1.0.0
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@jluebeck jluebeck released this 17 Aug 23:48
· 89 commits to master since this release
v1.0.0
75d11ae

1.0.0 is here! Not because of huge new improvements to the pipeline in this release, but because the features and codebase are finally stabilizing.

  • Adds support for AA v1.3.r6, which provides users with two new arguments
    • --sv_vcf, --sv_vcf_no_filter/
    • These allow AA to use externally provided SV calls from a VCF file
  • Log last_modified date from AA data repo
  • Improve usability of --completed_AA_runs mode
  • Update github links in container files, documentation, wrapper arguments, and lift singularity scipy version cap
  • Bugfixes to GroupedAnalysisAmpSuite.py
  • Improve install.sh
  • Differentiate various license, report the AA license explicitly since it is not the BSD-2-Clause
  • Include copy number flow in cycles_to_bed.py
  • Documentation updates
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