Added Dockerfile

.github/workflows/build_docker.yml

@@ -0,0 +1,31 @@
+# Build dockerfile on change
+name: Build Docker (Dockerfile)
+
+on:
+  push:
+    paths:
+    - 'Dockerfile'
+    - '.github/workflows/build_docker.yml'
+  pull_request:
+    paths:
+    - 'Dockerfile'
+    - '.github/workflows/build_docker.yml'
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+
+    # Build Tools
+    - name: Build and Publish
+      uses: elgohr/Publish-Docker-Github-Action@master
+      with:
+        name: andersenlab/bam_toolbox
+        username: ${{ secrets.KSE_DOCKER_USER }}
+        password: ${{ secrets.KSE_DOCKER_PASS }}
+        snapshot: true
+        dockerfile: Dockerfile
+        workdir: "."
+        tags: latest,${{ steps.current-time.formattedTime }}
+        cache: true

Dockerfile

@@ -0,0 +1,35 @@
+FROM continuumio/miniconda
+
+RUN apt-get  --allow-releaseinfo-change update -t oldoldstable && apt-get install -y \
+    build-essential \
+    bzip2 \
+    ca-certificates \
+    git \
+    libglib2.0-0 \
+    libsm6 \
+    libxext6 \
+    libxrender1 \
+    mariadb-server \
+    mariadb-client \
+    wget \
+    zlib1g-dev
+
+RUN conda install -c daler \
+    pip \
+    cython \
+    matplotlib \
+    nose \
+    numpydoc \
+    pip \
+    pandas \
+    pyyaml \
+    sphinx \
+    pysam
+RUN conda install -c daler \
+    tabix \
+    bedtools=2.25.0
+ENV DISPLAY=:0
+ENV LANG C.UTF-8
+WORKDIR /opt/pybedtools
+
+RUN pip install https://github.com/AndersenLab/bam-toolbox/archive/0.0.3.tar.gz