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fix ci
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AngryMaciek committed Mar 6, 2024
1 parent 4984e56 commit 4bf518a
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15 changes: 15 additions & 0 deletions .github/workflows/test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -67,6 +67,21 @@ jobs:
--cores 1
all
- name: Install demonanalysis into the env (Ubuntu)
shell: bash -l {0}
run: >
for file in .snakemake/conda/*.yaml; do
if [ -f "$file" ]; then
if grep -q "name: warlock-r" "$file"; then
ENVPATH="${file%.yaml}"
break
fi
fi
done
conda deactivate
conda activate $ENVPATH
conda info
# Run the tests sequentially;
# This could be parallelized in the CI but setting up conda
# is expensive; its faster to run the tests one-by-one.
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