Welcome to the repository for all the "mini-tutorials" on genomics data analysis and visualisation for members of the Mundlos lab! Here you will find all the markdown files for the informal sessions of data analysis tutorials.
- Basic ChIP-seq analysis: A walk-through from sequenced fastq file to peaks called with
macs2, all the basic steps to get to a bigWig file of peaks that can be visualised on a genome browser. As the first mini-tutorial, you will also find a quick start guide to the MPIMG's very ownmxqscheduling system. - Data visualisation in R: coming soon
- Differential gene expression from bulk RNA-seq using
salmonandDESeq2: coming soon