Fix in imperfect gap closing

AntonBankevich · Nov 27, 2024 · 3ea919e · 3ea919e
1 parent e923824
commit 3ea919e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/projects/assembly_graph/assembly_graph.hpp b/src/projects/assembly_graph/assembly_graph.hpp
@@ -539,7 +539,7 @@ namespace ag {
             }
         }
         AlignmentForm left_alignment = AlignmentForm::Equal(left_sub_alignment.queryLength()) + right_sub_alignment;
-        AlignmentForm right_alignment = left_sub_alignment.RC() + AlignmentForm::Equal(right_sub_alignment.targetLength());
+        AlignmentForm right_alignment = left_sub_alignment.Reverse() + AlignmentForm::Equal(right_sub_alignment.targetLength());
         Edge &new_edge = addEdge(leftEdge.getStart(), rightEdge.getFinish(), new_seq);
         new_edge.setCorporeal(false);
         new_edge.rc().setCorporeal(false);