Skip to content

This Repository contains different methods to reduce noise level in the concentration curve generated during DCE MRI.

License

Notifications You must be signed in to change notification settings

Armos05/DCE-MRI-data-noise-reduction

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

58 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

DCE-MRI-data-noise-reduction

Python 3.7 PyTorch 1.3

While recording MR signals, due to the random fluctuations the signals get noisy. Some of the attributed reasons can be electric fluctiations, muscle movement etc. This is project on how to reduce those noise so as to keep the signals intact, which would then help in better parameter estimation. This project utlizes semi-synthetic DCE-MRI time series signals, and test the state of the art deep learning denoising approaches on them. Some of the Models trained are:

1. Deep Recurrent Neural Network

(Antczak, K. (2018). Deep recurrent neural networks for ECG signal denoising, arXiv preprint arXiv:1807.11551)

  • Model architecture

image

2. Denoising LSTM

(Implementation of LSTM approach presented in Deep Learning Models for Denoising ECG Signals Corneliu T.C. Arsene, Richard Hankins, Hujun Yi https://ieeexplore.ieee.org/document/8902833)

  • Model architecture

image

3. Denoising CNN

(Implementation of LSTM approach presented in Deep Learning Models for Denoising ECG Signals Corneliu T.C. Arsene, Richard Hankins, Hujun Yi https://ieeexplore.ieee.org/document/8902833)

  • Model architecture

image

4. FCN-DAE

(Chiang, H. T., Hsieh, Y. Y., Fu, S. W., Hung, K. H., Tsao, Y., & Chien, S. Y. (2019) Noise reduction in ECG signals using fully convolutional denoising autoencoders IEEE Access, 7, 60806-60813)

  • Model architecture

image

5. End to End CNN encoder decoder

(End-to-End Trained CNN Encoder-Decoder Network for Fetal ECG Signal Denoising https://iopscience.iop.org/article/10.1088/1361-6579/ab69b9/meta)

  • Model architecture

image

6. Vanilla NL

(Deep Filter https://arxiv.org/pdf/2101.03423.pdf)

  • Model architecture

image

7. Res CNN

(A novel end-to-end 1D-ResCNN model to remove artifact from EEG signals https://www.sciencedirect.com/science/article/abs/pii/S0925231220305944)

  • Model architecture

image

Denoised Signals

  1. DRNN

image

  1. LSTM

image

  1. Denoising CNN

image

  1. FCN DAE

image

  1. Vanilla Nl

image

  1. DEEP Filter

image

  1. Res CNN

image

Training Time

in secs

image

Tabular Summary

SSD is Sum of Square Errors
MAD is Mean Absolute Difference
PRD is Percent Roor Mean Square Difference
COS SIM is the cosine similarity

image

Box-plot distribution of errors

SSD

image

MAD

image

PRD

image

COS SIM

image

stay tuned!!

About

This Repository contains different methods to reduce noise level in the concentration curve generated during DCE MRI.

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published