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@AuReMe

AuReMe

AUtomated REconstruction of MEtabolic models

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  1. metage2metabo metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    Jupyter Notebook 54 7

  2. mpwt mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    Python 15

  3. emapper2gbk emapper2gbk Public

    Forked from ArnaudBelcour/gff_to_gbk

    Convert GFF, fastas, annotation table and species name into Genbank.

    Python 14 5

  4. aucome aucome Public

    Automatic Comparison of Metabolism

    Python 6

  5. padmet padmet Public

    Python library for hAndling metaData of METabolism.

    Python 5 2

  6. esmecata esmecata Public

    From taxonomic affiliations to annotated proteins using UniProt database.

    Python 3 1

Repositories

Showing 10 of 17 repositories
  • mpwt Public

    Pathway Tools multiprocessing wrapper (for PathoLogic).

    AuReMe/mpwt’s past year of commit activity
    Python 15 LGPL-3.0 0 5 0 Updated Dec 22, 2024
  • esmecata Public

    From taxonomic affiliations to annotated proteins using UniProt database.

    AuReMe/esmecata’s past year of commit activity
    Python 3 GPL-3.0 1 1 0 Updated Dec 13, 2024
  • aucome Public

    Automatic Comparison of Metabolism

    AuReMe/aucome’s past year of commit activity
    Python 6 GPL-3.0 0 2 0 Updated Nov 13, 2024
  • MeneVal Public
    AuReMe/MeneVal’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 6, 2024
  • padmet Public

    Python library for hAndling metaData of METabolism.

    AuReMe/padmet’s past year of commit activity
    Python 5 GPL-3.0 2 3 0 Updated Oct 30, 2024
  • Ontosunburst Public Forked from PaulineGHG/Ontology_sunburst

    Sunburst representation of ontologies

    AuReMe/Ontosunburst’s past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated Aug 29, 2024
  • metage2metabo Public

    From annotated genomes to metabolic screening in large scale microbiotas

    AuReMe/metage2metabo’s past year of commit activity
    Jupyter Notebook 54 LGPL-3.0 7 9 0 Updated Aug 23, 2024
  • prolipipe Public Forked from ytirlet/prolific

    The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites

    AuReMe/prolipipe’s past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Jul 24, 2024
  • aureme Public
    AuReMe/aureme’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated Apr 24, 2024
  • HoloInteract Public

    Study interactions hosts and microorganisms at metabolic level.

    AuReMe/HoloInteract’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Apr 3, 2024

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