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TL;DR!

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Inês Mendes edited this page Jun 29, 2019 · 3 revisions

You want to get straight to the point? We got you!

  1. Install Nextflow and Container Engine (like Docker or Singulatiry)

  2. Clone the DEN-IM repository git clone https://github.com/B-UMMI/DEN-IM.git

  3. Execute the DEN-IM workflow nextflow run DEN-IM.nf --fastq /path/to/input/files/*_{1,2}.*

OR

  1. Run the DEN-IM workflow directly with nextflow nextflow run B-UMMI/DEN-IM --fastq /path/to/input/files/*_{1,2}.*
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