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BBtools and seqtk #39

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BBtools and seqtk #39

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063e331
updated to version 38.44
Apr 11, 2019
034b69a
updated to version 1.3
Apr 11, 2019
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19 changes: 19 additions & 0 deletions bbtools/Dockerfile
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Original file line number Diff line number Diff line change
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# DOCKERFILE for BBtools
FROM ubuntu:16.04
MAINTAINER Pedro Cerqueira, pedro.cerqueira@medicina.ulisboa.pt

#Update and install dependencies
RUN apt-get update && apt-get -y install \
bash \
wget \
default-jdk

WORKDIR /NGStools/

#Download and untar BBtools
RUN wget https://sourceforge.net/projects/bbmap/files/BBMap_38.44.tar.gz/download -O bbtools.tar.gz && tar -xvzf bbtools.tar.gz

RUN rm bbtools.tar.gz

#Add BBtools to environment variable
ENV PATH="/NGStools/bbmap:$PATH"
26 changes: 26 additions & 0 deletions seqtk/Dockerfile
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# DOCKERFILE for seqtk
FROM ubuntu:16.04
MAINTAINER Pedro Cerqueira, pedro.cerqueira@medicina.ulisboa.pt


WORKDIR /NGStools/

#Update and install dependencies
RUN apt-get update && apt-get -y install \
bash \
build-essential \
make \
git \
zlib1g-dev

#Clone seqtk from GitHub repo
RUN git clone https://github.com/lh3/seqtk.git

WORKDIR /NGStools/seqtk

#Build seqtk
RUN make

#Add seqtk to
ENV PATH="/NGStools/seqtk:$PATH"