Merge pull request #1042 from BCDA-APS/1039-ad_creator-plugin-class-n… #278
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name: Unit Tests & Code Coverage | |
on: | |
# Triggers the workflow on push or pull request events but only for the main branch | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: # allow manual triggering | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
lint: | |
name: Code style | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install package | |
run: | | |
set -vxeuo pipefail | |
python -m pip install --upgrade pip | |
- name: Run ruff | |
uses: davidslusser/actions_python_ruff@v1.0.2 | |
with: | |
python_version: "3.11" | |
# see .ruff.toml file for options | |
test-matrix: | |
name: Python ${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
needs: lint | |
strategy: | |
matrix: | |
python-version: | |
- "3.9" | |
- "3.10" | |
- "3.11" | |
# - "3.12" | |
max-parallel: 5 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Create Python ${{ matrix.python-version }} environment | |
# needed for Unpack step | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
cache-environment: true | |
cache-environment-key: env-key-${{ matrix.python-version }} | |
condarc: | | |
channel-priority: flexible | |
environment-file: environment.yml | |
environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
create-args: >- | |
coveralls | |
pytest | |
pytest-cov | |
python=${{ matrix.python-version }} | |
setuptools-scm | |
- name: Unpack | |
run: | | |
set -vxeuo pipefail | |
pip install databroker-pack | |
which databroker-pack | |
which databroker-unpack | |
cd resources | |
bash ./unpack.sh | |
cmd="import databroker;" | |
cmd+=" print(list(databroker.catalog));" | |
cmd+=" print(databroker.catalog_search_path());" | |
python -c "${cmd}" | |
cd .. | |
# - name: Directory Listings | |
# run: | | |
# set -vxeuo pipefail | |
# ls -lAFghR ~/.local/share/intake | |
# ls -lAFghR /tmp/*_test/ | |
- name: Start EPICS IOCs in Docker | |
run: | | |
set -vxeuo pipefail | |
bash ./.github/scripts/iocmgr.sh start GP gp | |
bash ./.github/scripts/iocmgr.sh start ADSIM ad | |
docker ps -a | |
ls -lAFgh /tmp/docker_ioc/iocad/ | |
ls -lAFgh /tmp/docker_ioc/iocgp/ | |
- name: Confirm EPICS IOC is available via caget | |
shell: bash -l {0} | |
run: | | |
set -vxeuo pipefail | |
docker exec iocgp grep float1 /home/iocgp/dbl-all.txt | |
docker exec iocgp /opt/base/bin/linux-x86_64/caget gp:UPTIME gp:gp:float1 | |
docker exec iocad /opt/base/bin/linux-x86_64/caget ad:cam1:Acquire_RBV | |
which caget | |
caget gp:UPTIME | |
caget gp:gp:float1 | |
caget ad:cam1:Acquire_RBV | |
- name: Confirm EPICS IOC is available via PyEpics | |
shell: bash -l {0} | |
run: | | |
python -c "import epics; print(epics.caget('gp:UPTIME'))" | |
CMD="import epics" | |
CMD+="; print(epics.caget('gp:UPTIME'))" | |
python -c "${CMD}" | |
- name: Confirm EPICS IOC is available via ophyd | |
shell: bash -l {0} | |
run: | | |
CMD="import ophyd" | |
CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | |
CMD+="; pv = ophyd.EpicsSignalRO('gp:gp:float1', name='pv')" | |
CMD+="; up.wait_for_connection()" | |
CMD+="; print(up.get(), pv.get())" | |
python -c "${CMD}" | |
- name: Test catalog length, expect 53 | |
shell: bash -l {0} | |
run: | | |
CMD="import databroker" | |
CMD+="; print(len(databroker.catalog['apstools_test']))" | |
python -c "${CMD}" | |
- name: Run tests with pytest & coverage | |
shell: bash -l {0} | |
run: | | |
set -vxeuo pipefail | |
coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst . | |
coverage combine | |
coverage report --precision 3 | |
- name: Upload coverage data to coveralls.io | |
shell: bash -l {0} | |
run: | | |
set -vxeuo pipefail | |
micromamba list coveralls | |
which coveralls | |
coveralls debug | |
coveralls --service=github | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
COVERALLS_PARALLEL: true | |
# https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
coveralls: | |
name: Report unit test coverage to coveralls | |
needs: test-matrix | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Gather coverage and report to Coveralls | |
run: | | |
set -vxeuo pipefail | |
echo "Finally!" | |
pip3 install --upgrade coveralls | |
# debug mode: output prepared json and reported files list to stdout | |
# https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
coveralls debug | |
coveralls --service=github --finish | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |