- fastq to counts: Sequence quality filtering, alignment, and counts with SEAsnake: Software to our run pipeline
- Counts to voom: Count quality filtering and normalization with
edgeRandlimma - Voom to DEG: Linear modeling to determine differentially expressed genes (DEG) with
kimma - RNAseq modules: Gene co-expression modules with
WGCNA - Gene set analysis: Including hypergeometric enrichment,
enrichr, gene set enrichment analysis (GSEA), and STRING networks
-
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