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Small bugfixes, custom folders export, script templates

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@lacan lacan released this 03 Aug 08:51
· 50 commits to main since this release

This new release adds the following

  1. You can define output folders for all things now when invoking the builder:
    • groundTruthDirectory(java.io.File groundTruthDirectory) Specify the training directory where thes test and train images will be added
    • tempDirectory(java.io.File groundTruthDirectory) Specify the temporary directory when using cellpose inference
    • modelDirectory(java.io.File groundTruthDirectory) Specify the where the model will be saved
    • the Quality Control results remain inside the model directory
  2. an Omnipose internal variable name had a typo and was fixed. You will have to re-enter the path in in your Edit > Preferences if you are using Omnipose
  3. Script templates: Training and detection script templates are now in Extensions > Cellpose, Just like the StarDist extension (Thank you @petebankhead)
  4. Names for Cellpose preferences were changed to empahsise how we need the full path to python.exe

Happy Cellposing