chore: patch opticks for incorrect numpy dtype (#81)

Dockerfile

@@ -69,12 +69,15 @@ ENV NVIDIA_DRIVER_CAPABILITIES=graphics,compute,utility
 
 WORKDIR $ESI_DIR
 
+COPY .opticks .opticks
 COPY epic epic
 COPY opticks opticks
-COPY .opticks .opticks
+COPY patches patches
 COPY tests tests
 COPY NVIDIA-OptiX-SDK-7.6.0-linux64-x86_64.sh .
 
+RUN patch -p1 opticks/sysrap/sevt.py patches/opticks-fix-update-array-dtype-for-numpy-1.26.patch
+
 COPY <<-"EOF" /etc/profile.d/z20_opticks.sh
     source $OPTICKS_HOME/opticks.bash
     opticks-

patches/opticks-fix-update-array-dtype-for-numpy-1.26.patch

@@ -0,0 +1,33 @@
+From 3c2a0ac17c2fb6d00cb08c2e7add4660642e8c46 Mon Sep 17 00:00:00 2001
+From: Dmitri Smirnov <dmixsmi@gmail.com>
+Date: Fri, 24 May 2024 12:41:09 -0400
+Subject: [PATCH] fix: update array dtype for numpy >= 1.26
+
+---
+ sysrap/sevt.py | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/sysrap/sevt.py b/sysrap/sevt.py
+index 191926c34..a67de5d7e 100644
+--- a/sysrap/sevt.py
++++ b/sysrap/sevt.py
+@@ -380,13 +380,13 @@ class SEvt(object):
+             qtab = eval(qtab_)
+             qtab_ = qtab_.replace("q","%s.q" % symbol)
+
+-            nosc = np.ones(len(qq), dtype=np.bool )       # start all true
++            nosc = np.ones(len(qq), dtype=bool )       # start all true
+             nosc[np.where(qq == pcf.SC)[0]] = 0     # knock out photons with scatter in their histories
+
+-            nore = np.ones(len(qq), dtype=np.bool )       # start all true
++            nore = np.ones(len(qq), dtype=bool )       # start all true
+             nore[np.where(qq == pcf.RE)[0]] = 0     # knock out photons with reemission in their histories
+
+-            noscab = np.ones(len(qq), dtype=np.bool )     # start all true  
++            noscab = np.ones(len(qq), dtype=bool )     # start all true
+             noscab[np.where(qq == pcf.SC)[0]] = 0   # knock out photons with scatter in their histories
+             noscab[np.where(qq == pcf.AB)[0]] = 0   # knock out photons with bulk absorb  in their histories
+         else:
+-- 
+2.39.3
+