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Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9

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GT-Scan2 workflow

data contains the data files used to construct and test the model

  • Chari.featureTable.txt: feature matrix for the Chari et al 2015 dataset
  • Chari.scores.txt: WU-CRISPR, sgRNA Scorer and Azimuth scores for the Chari et al 2015 dataset
  • Horlbeck.featureTable.txt: feature matrix for the Horlbeck et al 2016 dataset
  • Horlbeck.scores.txt: WU-CRISPR, sgRNA Scorer and Azimuth scores for the Horlbeck et al 2016 dataset

code/GT-Scan2.final.R workflow for construction and testing of model

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Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9

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