update docstrings and refactor to class FusionSitesFinder #19
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| name: CI Build | |
| on: | |
| pull_request: | |
| push: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.9', '3.10', '3.11' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: | | |
| if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| # - name: Lint with flake8 | |
| # run: flake8 | |
| # - name: docstring coverage | |
| # run: | | |
| # docstr-coverage seqteleporter/ --fail-under=100 --badge="./docs_badge.svg" | |
| - name: Test with python unittest | |
| run: | | |
| coverage run -m unittest discover -s tests/ | |
| coverage report -m | |
| # - name: Generate demo | |
| # run: | | |
| # jupyter nbconvert ./demo/seqTeleporter_demo.ipynb --to html --ouput index --output-dir ./ |