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0.0.5 #5

Merged
merged 31 commits into from
Jul 22, 2024
Merged

0.0.5 #5

merged 31 commits into from
Jul 22, 2024

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Benncs
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@Benncs Benncs commented Jul 22, 2024

Summary

Integrate CMTool new strucuture to read flowmap.
New python package for data post-processing
New biological model and implementation of implicit backward euler
Add scalar input /output (feed,oulet) support. Add particle output support
Full refractor and check.
New build script

Content

  • Scope:
    • Code: if relevant, add affected target
    • Build script: if relevant, add affected target
    • Documentation
    • CI
    • Repository
    • Other: ...
  • Type of change:
    • New feature(s)
    • Fix: if relevant, add issue #...
    • Testing
    • Refactor
    • Revert
    • Chore
  • Other:
    • Breaking change
    • New dependency
  • Necessary follow-up:
    • Needs documentation
    • Needs testing
    • Other: ...

Benjamin Casale and others added 30 commits July 2, 2024 11:13
…, new module selection system

Model breaking change

Python support has been improved to be used using MPI and no OMP:
working but slower (10x slower)

Every modules can define a function (get_properties) that returns
HashMap for their properties name ans values. This can be integrated at
the end of simulation and export in hdf5 (all particles properties and
spatial average)

Python module with divisions has been tested
Add python script to auto generate model_loader, use model name instead.
…dataexporter particle data use raw data instead of copy
For transition which is a sparse, acces to diagonal is less efficient
than contiugous span of double
For probability: ease of use instead of passing Matrix
@Benncs Benncs added bug Something isn't working enhancement New feature or request labels Jul 22, 2024
@Benncs Benncs self-assigned this Jul 22, 2024
@Benncs Benncs merged commit a53d520 into main Jul 22, 2024
0 of 7 checks passed
@Benncs Benncs deleted the dev_0.0.5 branch July 22, 2024 14:53
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