Cancer Detection using DNA Methylation Data

Environment Setup

Poetry

Requirements

• Python (>= 3.11)
• Poetry (>= 1.8.3)

Setup

configure poetry to create virtual environments in the project directory

poetry config virtualenvs.in-project true

install dependencies

poetry install

add dependencies

poetry add <package>

renv

Requirements

• R (>= 4.4.1)
• Renv(>= 1.0.7)

Setup

install renv if not already installed

install.packages("renv", repos = "https://cran.csie.ntu.edu.tw/")

install dependencies from the lockfile

renv::restore()

update the lockfile

renv::snapshot()

Warning

default renv setting does not snapshot all dependencies, you may need to set snapshot.type = "all" as follows:

renv::settings$snapshot.type("all")