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Sagi Polaczek committed Dec 19, 2024
1 parent 3da5808 commit 538b2f8
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Showing 7 changed files with 14 additions and 7 deletions.
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from typing import List, Optional, Union
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id
import fusedrug.data.interaction.drug_target.datasets.dti_binding_dataset as dbd


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from typing import Optional, Dict
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id
from fusedrug.utils.file_formats import IndexedTextTable
import numpy

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3 changes: 2 additions & 1 deletion fusedrug/data/molecule/ops/augment.py
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@@ -1,7 +1,8 @@
import numpy as np
from rdkit import Chem
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id


class SmilesRandomizeAtomOrder(OpBase):
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3 changes: 2 additions & 1 deletion fusedrug/data/molecule/ops/loaders/smi_loader.py
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from typing import Optional
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id
from fusedrug.utils.file_formats import IndexedTextTable


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3 changes: 2 additions & 1 deletion fusedrug/data/molecule/ops/smiles_ops.py
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from rdkit import Chem
from rdkit.Chem.rdmolops import SanitizeFlags
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id


class SmilesToRDKitMol(OpBase):
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3 changes: 2 additions & 1 deletion fusedrug/data/protein/ops/loaders/fasta_loader.py
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from typing import Dict, Optional
from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id
from fusedrug.utils.file_formats import IndexedFasta, IndexedFastaCustom

"""
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3 changes: 2 additions & 1 deletion fusedrug/data/tokenizer/ops/fast_tokenizer_ops.py
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from fuse.utils import NDict
from fuse.data import OpBase, get_sample_id
from fuse.data import OpBase
from fuse.data.utils.sample import get_sample_id
from tokenizers import Tokenizer
from tokenizers.normalizers import Normalizer
from tokenizers.pre_tokenizers import PreTokenizer
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