CI #535
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| name: CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - "README.md" | |
| - "**/docs/**" | |
| - ".github/workflows/docs.yml" | |
| - "paper.md" | |
| - "paper.bib" | |
| - "**/joss_plots/**" | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| schedule: | |
| - cron: "0 11 * * *" | |
| jobs: | |
| test-pip: | |
| name: Test on Pip | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache data folder | |
| uses: actions/cache@v2 | |
| id: cache-data-folder | |
| with: | |
| path: ~/data | |
| key: data | |
| - name: Download data folder | |
| env: | |
| CACHE_HIT: ${{steps.cache-data-folder.outputs.cache-hit}} | |
| run: | | |
| echo "Getting data folder" | |
| if [[ "$CACHE_HIT" == 'true' ]]; then | |
| echo "data folder already in cache. using this." | |
| else | |
| echo "Download zip data folder." | |
| wget https://grb.mpe.mpg.de/pyspi_datafolder | |
| mv pyspi_datafolder ~/data.zip | |
| unzip -o ~/data.zip -d ~/ | |
| fi | |
| - name: Install Multinest | |
| run: | | |
| sudo apt-get install -qq libblas{3,-dev} liblapack{3,-dev} cmake build-essential git gfortran | |
| git clone https://github.com/farhanferoz/MultiNest.git | |
| mkdir /home/runner/multinest_install | |
| cd MultiNest/MultiNest_v3.12_CMake/multinest | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=/home/runner/multinest_install .. | |
| make | |
| make install | |
| export LD_LIBRARY_PATH=/home/runner/multinest_install:${LD_LIBRARY_PATH} | |
| cd ../../../ | |
| pwd | |
| - name: Install dependencies | |
| run: | | |
| mkdir /home/runner/PySPI_data | |
| python -m pip install --upgrade pip wheel | |
| pip install cryptography pyOpenSSL pyvo pyRXP --upgrade; | |
| pip install --upgrade astromodels | |
| pip install --upgrade threeML | |
| pip install --upgrade flake8 coverage pytest-cov cython | |
| pip install pandas==1.3 | |
| pip install -e . | |
| - name: Copy example data folder to external data folder | |
| run: | | |
| mkdir -p /home/runner/PySPI_data/pointing_data | |
| cp -r pyspi/data/* /home/runner/PySPI_data/pointing_data | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test pip on ${{ matrix.python-version }} | |
| run: | | |
| python -m pytest -vv --cov=pyspi --cov-report=xml | |
| env: | |
| PYTEST_ADDOPTS: "--color=yes" | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| PYSPI: /home/runner/PySPI_data | |
| PYSPI_PACKAGE_DATA: /home/runner/data | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| files: ./coverage1.xml,./coverage2.xml | |
| directory: ./coverage/reports/ | |
| publish-pypi: | |
| name: Publish to PyPi | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') && (! endsWith(github.ref, 'dev')) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - name: Build package | |
| run: | | |
| pip install wheel | |
| python setup.py sdist | |
| - name: Publish | |
| uses: pypa/gh-action-pypi-publish@v1.1.0 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYSPI_GITHUB_PYPI }} | |
| skip-existing: true | |
| test-publish-pypi: | |
| name: Build & verify package | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Install twine | |
| run: | | |
| python -m pip install twine | |
| - name: Build package | |
| run: | | |
| python setup.py sdist | |
| - name: List result | |
| run: | | |
| ls -lh dist | |
| - name: Check long_description | |
| run: | | |
| python -m twine check dist/* |