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adapt singlecell example to macos #180

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merged 3 commits into from
Jan 9, 2025
Merged

adapt singlecell example to macos #180

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e651da3
adapt singlecell example to macos
Jan 9, 2025
93844af
fix typo
Jan 9, 2025
884efaa
make singlecell example trace download compatible with both linux and…
Jan 9, 2025
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2 changes: 1 addition & 1 deletion examples/simplecell/download_ephys_data.sh
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Expand Up @@ -62,7 +62,7 @@ FILES_TO_DOWNLOAD=(
mkdir -p "$DEST_DIR"

# Fetch the list of files from the GitHub API and filter for required files
FILES=$(curl -s "$BASE_API" | grep -oP "\"path\": \"$FOLDER/.*?\.ibw\"" | grep -oP "(?<=\"$FOLDER/)[^\"]+")
FILES=$(curl -s "$BASE_API" | grep -oE "\"path\": \"$FOLDER/[^\"]*\.ibw")

# Download each file if it matches the list to download
for file in $FILES; do
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4 changes: 3 additions & 1 deletion examples/simplecell/simplecell.ipynb
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Expand Up @@ -12,7 +12,9 @@
"\n",
"However, here we will present the rheobase independent approach which means that we use specific amplitude values like `IDRest_1.0` (indicating a fixed current of 1.0 nA) instead of `IDRest_100` (which represents 100% of the rheobase).\n",
"\n",
"For rheobase dependent optimisation or additional details, please refer to the [L5PC](./../L5PC/) example."
"For rheobase dependent optimisation or additional details, please refer to the [L5PC](./../L5PC/) example.\n",
"\n",
"Please note that in this example we will use only the two NEURON-inbuilt HH channels for simplicity. As such, the output model will not be able to accurately reproduce the experimental traces, but the optimisation will demonstrate its ability to produce at least a spiking model. "
]
},
{
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