Chore: Remove some warnings

neurots/validator.py

@@ -19,17 +19,20 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 import json
-from pathlib import Path
+
+try:
+    import importlib_resources as resources
+except ImportError:
+    from importlib import resources
 
 import jsonschema
-import pkg_resources
 
-SCHEMA_PATH = pkg_resources.resource_filename("neurots", "schemas")
+SCHEMA_PATH = resources.files("neurots") / "schemas"
 
-with Path(SCHEMA_PATH, "parameters.json").open(encoding="utf-8") as f:
+with (SCHEMA_PATH / "parameters.json").open(encoding="utf-8") as f:
     PARAMS_SCHEMA = json.load(f)
 
-with Path(SCHEMA_PATH, "distributions.json").open(encoding="utf-8") as f:
+with (SCHEMA_PATH / "distributions.json").open(encoding="utf-8") as f:
     DISTRIBS_SCHEMA = json.load(f)
 
 

pyproject.toml

@@ -34,3 +34,7 @@ force_single_line = true
 testpaths = [
     "tests",
 ]
+filterwarnings = [
+    "ignore:The --rsyncdir command.*:DeprecationWarning:xdist",
+    "ignore:Pyarrow will become a required dependency of pandas.*:DeprecationWarning:diameter-synthesis",
+]

setup.py

@@ -22,10 +22,12 @@
 
 reqs = [
     "jsonschema>=3.0.1",
+    "importlib-resources>=5; python_version < '3.9'",
     "matplotlib>=3.4",
     "morphio>=3.3.6,<4.0",
     "neurom>=3.0,<4.0",
     "numpy>=1.22.0",
+    "packaging>=20",
     "scipy>=1.6",
     "tmd>=2.3.0",
     "diameter-synthesis>=0.5.4",

tests/test_extract_input.py

@@ -27,13 +27,13 @@
 from neurom import load_morphologies
 from numpy.testing import assert_array_almost_equal
 from numpy.testing import assert_equal
-from pkg_resources import parse_version
+from packaging import version
 
 from neurots import NeuroTSError
 from neurots import extract_input
 from neurots import validator
 
-_OLD_NUMPY = parse_version(np.__version__) < parse_version("1.21")
+_OLD_NUMPY = version.parse(np.__version__) < version.parse("1.21")
 
 _PATH = os.path.join(os.path.dirname(os.path.abspath(__file__)), "..", "test_data")
 POP_PATH = os.path.join(_PATH, "bio/")
@@ -883,3 +883,6 @@ def test_transform_distr():
     ss = neurom.stats.fit(data, distribution="expon")
     res = extract_input.from_neurom.transform_distr(ss)
     assert_equal(res, {"expon": {"loc": 0.005522117123602399, "lambda": 2.1521175837421254}})
+
+    ss = neurom.stats.fit(data, distribution="exponnorm")
+    assert extract_input.from_neurom.transform_distr(ss) is None