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BlueBrain / SSCxEModelExamples Public

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Add somatic validation's feature extraction notebook#7

Merged

anilbey merged 22 commits intomainBlueBrain/SSCxEModelExamples:mainfrom som-valBlueBrain/SSCxEModelExamples:som-valCopy head branch name to clipboard

Nov 8, 2022

+5,838-4

Conversation Commits22 (22)Checks Files changed

Commits

Commits on Nov 3, 2022

add 144 traces of sAHP IDhyperpol APThreshold for som val
anilbey
committed
add feature extraction for somatic_validation
anilbey
committed

Commits on Nov 4, 2022

move protocols_rheobase outside get_config
anilbey
committed
Have 500 and 530 amp targets for APThreshold
anilbey
committed
BUGFIX: use itertools.product instead of zip in multiplying target amp and tolerances
anilbey
committed
group imports at top
anilbey
committed
parametrise plotting and per-cell extraction
anilbey
committed
make timings immutable and not global
anilbey
committed
make read-only variables immutable
anilbey
committed
separate translating of targets from get_config
anilbey
committed
rename get_config -> get_files_metadata
anilbey
committed
immutable where possible, use Mapping annotation
anilbey
committed
rename cells_dir -> traces_dir
anilbey
committed

Commits on Nov 7, 2022

somatic val specify bluepyefe >= 2.1.24
anilbey
committed
add somatic validation's feature extraction notebook
anilbey
committed
remove unused np import from feature-extraction nb
anilbey
committed
update .gitignore
anilbey
committed
add somatic validation feature extraction test
anilbey
committed
add somatic-validation to github ci
anilbey
committed
fix yml syntax in gh actions
anilbey
committed
use pandas df for checking the test values
anilbey
committed
use pandas.testing.assert_frame_equal
anilbey
committed

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