Chore: Apply Copier template (#13)

[skip-changelog]

.auto-changelog

@@ -3,7 +3,7 @@
     "template": ".auto-changelog-template.hbs",
     "commitLimit": false,
     "backfillLimit": false,
-    "ignoreCommitPattern": "Release:? [0-9]+\\.[0-9]+\\.[0-9]+|Update CHANGELOG.*|.*\\[skip-changelog\\].*|\\[pre-commit.ci\\]",
+    "ignoreCommitPattern": "^Release:? [0-9]+\\.[0-9]+\\.[0-9]+$|^Update CHANGELOG.*|.*\\[skip-changelog\\].*|^\\[pre-commit.ci\\]|^\\(dependabot\\) .*",
     "commitUrl": "https://github.com/BlueBrain/emodel-generalisation/commit/{id}",
     "issueUrl": "https://github.com/BlueBrain/emodel-generalisation/issues/{id}",
     "mergeUrl": "https://github.com/BlueBrain/emodel-generalisation/pull/{id}",

.copier-answers.yml

@@ -1,7 +1,8 @@
 # Changes here will be overwritten by Copier
 
-_commit: 0.1.44
+_commit: 0.1.51
 _src_path: git@bbpgitlab.epfl.ch:neuromath/python-template.git
+author_email: bbp-ou-cells@groupes.epfl.ch
 author_name: Blue Brain Project, EPFL
 copyright_license: GNU General Public License v3.0
 copyright_year: '2023'
@@ -16,7 +17,9 @@ project_url: https://emodel-generalisation.readthedocs.io
 repository_name: emodel-generalisation
 repository_namespace: BlueBrain
 repository_provider: github
-support_py37: false
+setup_codeql: false
+ssh_url: git@github.com:BlueBrain/emodel-generalisation.git
+team_name: neuromath
 tracker_url: https://github.com/BlueBrain/emodel-generalisation/issues
 use_pyproject_toml: false
 version: 0.1.0.dev0

.github/dependabot.yml

@@ -11,3 +11,6 @@ updates:
     directory: "/" # Check the repository's workflows under /.github/workflows/
     schedule:
       interval: "weekly"
+    commit-message:
+      # Prefix all commit messages with "CI(dependabot): "
+      prefix: "CI(dependabot): "

.github/workflows/run-tox.yml

@@ -72,14 +72,14 @@ jobs:
       uses: codecov/codecov-action@v3
       with:
         fail_ci_if_error: false
-        files: ./coverage.xml
+        directory: ./reports
         flags: pytest
-        name: "emodel-generalisation-py${{ matrix.python-version }}"
+        name: "emodel-generalisation-py${{ matrix.python-version }}-${{ matrix.min_versions }}"
     - name: Upload test artifacts
       uses: actions/upload-artifact@v3
       if: always()
       with:
-        name: tests-${{ matrix.python-version }}
+        name: tests-${{ matrix.python-version }}-${{ matrix.min_versions }}
         retention-days: 4
         path: |
           .tox/py*/tmp

.pre-commit-config.yaml

@@ -24,11 +24,11 @@ repos:
     hooks:
       - id: isort
   - repo: https://github.com/psf/black
-    rev: 23.3.0
+    rev: 23.9.1
     hooks:
       - id: black
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.4
+    rev: v2.2.5
     hooks:
       - id: codespell
         args: ["-x", ".codespellignorelines"]
@@ -38,6 +38,6 @@ repos:
           # - id: pydocstyle
           #additional_dependencies: ["tomli"]
   - repo: https://github.com/PyCQA/flake8
-    rev: 6.0.0
+    rev: 6.1.0
     hooks:
       - id: flake8

codecov.yml

@@ -0,0 +1,4 @@
+comment:
+  layout: "diff, flags, files"
+  behavior: default
+  require_changes: true

package.json

@@ -5,29 +5,29 @@
       "([bB]reaking: ?)": "",
       "([bB]reaking change: ?)": "",
       "(^[bB]uild: ?)": "",
-      "(^[bB]uild\\((.*)\\): ?)": "\\($2\\)",
+      "(^[bB]uild\\((.*)\\): ?)": "($2) ",
       "(^[cC]hore: ?)": "",
-      "(^[cC]hore\\((.*)\\): ?)": "\\($2\\)",
+      "(^[cC]hore\\((.*)\\): ?)": "($2) ",
       "(^[cC][iI]: ?)": "",
-      "(^[cC][iI]\\((.*)\\): ?)": "\\($2\\)",
+      "(^[cC][iI]\\((.*)\\): ?)": "($2) ",
       "(^[dD]eprecate: ?)": "",
-      "(^[dD]eprecate\\((.*)\\): ?)": "\\($2\\)",
+      "(^[dD]eprecate\\((.*)\\): ?)": "($2) ",
       "(^[dD]ocs: ?)": "",
-      "(^[dD]ocs\\((.*)\\): ?)": "\\($2\\)",
+      "(^[dD]ocs\\((.*)\\): ?)": "($2) ",
       "(^[fF]eat: ?)": "",
-      "(^[fF]eat\\((.*)\\): ?)": "\\($2\\)",
+      "(^[fF]eat\\((.*)\\): ?)": "($2) ",
       "(^[fF]ix: ?)": "",
-      "(^[fF]ix\\((.*)\\): ?)": "\\($2\\)",
+      "(^[fF]ix\\((.*)\\): ?)": "($2) ",
       "(^[pP]erf: ?)": "",
-      "(^[pP]erf\\((.*)\\): ?)": "\\($2\\)",
+      "(^[pP]erf\\((.*)\\): ?)": "($2) ",
       "(^[rR]efactor: ?)": "",
-      "(^[rR]efactor\\((.*)\\): ?)": "\\($2\\)",
+      "(^[rR]efactor\\((.*)\\): ?)": "($2) ",
       "(^[rR]evert: ?)": "",
-      "(^[rR]evert\\((.*)\\): ?)": "\\($2\\)",
+      "(^[rR]evert\\((.*)\\): ?)": "($2) ",
       "(^[sS]tyle: ?)": "",
-      "(^[sS]tyle\\((.*)\\): ?)": "\\($2\\)",
+      "(^[sS]tyle\\((.*)\\): ?)": "($2) ",
       "(^[tT]est: ?)": "",
-      "(^[tT]est\\((.*)\\): ?)": "\\($2\\)"
+      "(^[tT]est\\((.*)\\): ?)": "($2) "
     }
   }
 }