Feat: Handle thalamus protocols

[arnaudon]

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[codecov-commenter]

Codecov Report

Attention: 55 lines in your changes are missing coverage. Please review.

Comparison is base (8edb530) 37.98% compared to head (fc157bf) 37.91%.

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #22      +/-   ##
==========================================
- Coverage   37.98%   37.91%   -0.07%     
==========================================
  Files          23       23              
  Lines        6192     6245      +53     
  Branches     1205     1215      +10     
==========================================
+ Hits         2352     2368      +16     
- Misses       3561     3597      +36     
- Partials      279      280       +1     

Flag	Coverage Δ
pytest	37.91% <31.25%> (-0.07%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files	Coverage Δ
emodel_generalisation/information.py	11.05% <ø> (ø)
emodel_generalisation/model/ecodes.py	41.94% <100.00%> (+0.43%)	⬆️
emodel_generalisation/mcmc.py	32.18% <71.42%> (+0.38%)	⬆️
emodel_generalisation/model/evaluation.py	50.49% <36.36%> (-0.44%)	⬇️
emodel_generalisation/model/bpopt.py	74.27% <37.93%> (-2.47%)	⬇️
emodel_generalisation/cli.py	68.72% <9.67%> (-2.92%)	⬇️

... and 1 file with indirect coverage changes