Docs: Fix commands given in the examples #39
arnaudonAnnotations
2 errors and 1 warning
|
test_vacuum_workflow.test_ValidateVacuumSynthesis@group_vacuum:
tests/test_vacuum_workflow.py#L30
AssertionError: The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/morphometrics/morphometrics_apical_dendrite.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/morphometrics/morphometrics_apical_dendrite.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/morphometrics/morphometrics_basal_dendrite.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/morphometrics/morphometrics_basal_dendrite.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/score_matrix_reports.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/score_matrix_reports.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
|
|
test_O1_workflow.test_ValidateSynthesis@group_O1:
tests/test_O1_workflow.py#L1
failed on setup with "subprocess.CalledProcessError: Command '['brainbuilder', 'atlases', '-n', '6,5,4,3,2,1', '-t', '200,100,100,100,100,200', '-d', '100', '-o', '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw2/test_ValidateSynthesis0/small_O1', 'column', '-a', '1000']' returned non-zero exit status 1."
|
|
Check PR title
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|