Build(deps): Relax NeuroTS and region-grower versions

examples/rat_vaccum/luigi.cfg

@@ -1,5 +1,8 @@
 # this example runs synthesis in vacuum (without atlas, cells synthesised at [0, 0, 0] without layer thickness adaptation)
 
+[RunnerConfig]
+nb_jobs = 1
+
 [SynthesisConfig]
 # comment this line to synthesize all available mtypes
 mtypes = ["L5_TPC:A", "L1_DAC"]

requirements/base.pip

@@ -4,7 +4,7 @@ bluepy-configfile>=0.1.19
 bluepymm>=0.8.5
 bluepyparallel>=0.0.8
 brainbuilder>=0.18.3
-diameter_synthesis>=0.5.3
+diameter_synthesis>=0.5.4
 dictdiffer>=0.9
 gitpython>=3.1.30
 jinja2>=3
@@ -14,18 +14,18 @@ luigi>=3.2
 luigi-tools>=0.2.1
 matplotlib>=3.6.3
 morph_tool>=2.9.1,<3
-morphio>=3.3.4,<4
+morphio>=3.3.6,<4
 neuroc>=0.2.8,<1
 neurocollage>=0.3.0
 neurom>=3.2.2,<4
-neurots>=3.3.1,<3.4.1
+neurots>=3.4.1,<4
 numpy>=1.24.1
 pandas>=1.5.3
 placement_algorithm>=2.3.1
 PyYAML>=6
-region_grower>=1.0.0,<1.1.1
+region_grower>=1.0.0,<2
 scipy>=1.10
 seaborn>=0.12.2
-tmd>=2.2
+tmd>=2.3
 tqdm>=4.64.1
 voxcell>=3.1.3,<4

src/version.py

@@ -1,2 +1,2 @@
 """Package version."""
-VERSION = "1.0.2"
+VERSION = "1.1.0.dev0"

tests/data/in_small_O1/out/synthesis/apical_points.yaml

@@ -2,49 +2,49 @@
 216363698b529b4a97b750923ceb3ffd: null
 4462ebfc5f915ef09cfbac6e7687a66e: null
 48f165d57b00c7f4781ef86f5c8cc1ab:
-- -15.13473892211914
-- 197.90081787109375
-- 4.8164381980896
+- 1.0846096277236938
+- 200.81143188476562
+- 3.6691887378692627
 4dad2986ce8349606a06e9ab85a0bcc1:
-- -30.530948638916016
-- 195.971923828125
-- 4.9200663566589355
+- 6.183896064758301
+- 196.69227600097656
+- 1.9936573505401611
 5bc8fbbcbde5c0994164d8399f767c45: null
 6018366cf658f7a75ed34fe53a096533: null
 6513270e269e0d37f2a74de452e6b438: null
 72e63ac7a95383221f70d5dc2e675fc7:
-- 0.8049216866493225
-- 195.4897003173828
-- 0.9922693371772766
+- -10.834639549255371
+- 196.5214385986328
+- -20.68924331665039
 7b89296c6dcbac5008577eb1924770d3:
-- -6.104157447814941
-- 193.84530639648438
-- -23.674091339111328
+- 29.904052734375
+- 189.7825164794922
+- -0.43575024604797363
 8575062102fbcd4f357fbc5af71a1bfc:
-- -23.728622436523438
-- 193.05943298339844
-- 7.200611114501953
+- 7.837672233581543
+- 198.6809539794922
+- 3.10603404045105
 87751d4ca8501e2c44dcda6a797d76de:
-- -16.302783966064453
-- 196.42567443847656
-- -5.135993957519531
+- -3.613675355911255
+- 193.3195037841797
+- 0.663608193397522
 b8a1abcd1a6916c74da4f9fc3c6da5d7: null
 c15521b1b3dca50a9daa37e51b591d75:
-- 2.961836099624634
-- 196.2926788330078
-- 11.131511688232422
+- 6.65926456451416
+- 198.2982177734375
+- 1.4248672723770142
 cd613e30d8f16adf91b7584a2265b1f5: null
 d95bafc8f2a4d27bdcf4bb99f4bea973: null
 db5b5fab8f4d3e27dda1494c73cf256d:
-- 20.171171188354492
-- 195.2149200439453
-- 12.857683181762695
+- -2.8398842811584473
+- 197.15805053710938
+- -15.908510208129883
 e3e70682c2094cac629f6fbed82c07cd: null
 e539a78bc8eff3460b12ae6ead581e57:
-- 0.8563539981842041
-- 194.0459747314453
-- 10.72212028503418
+- -5.473010063171387
+- 198.32235717773438
+- -3.1372883319854736
 e8d79f49af6d114c4a6f188a424e617b:
-- 0.7175451517105103
-- 197.03636169433594
-- -3.5991575717926025
+- -21.98592758178711
+- 198.70675659179688
+- -13.453657150268555