Fix CLI for synthesis-workflow and MorphVal

Change-Id: I50004c77706aaa45dc6afc850e3709a9201e0469

setup.py

@@ -21,6 +21,7 @@
     "diameter_synthesis>=0.1.7",
     "gitpython",
     "h5py<3",
+    "jinja2",
     "joblib",
     "luigi",
     "matplotlib",
@@ -30,6 +31,7 @@
     "neurom!=2.0.1.dev4",
     "pandas",
     "placement_algorithm>=2.1.1",
+    "PyYAML",
     "region_grower>=0.1.10",
     "scipy",
     "seaborn",
@@ -85,7 +87,10 @@
         "Topic :: Scientific/Engineering :: Bio-Informatics",
     ],
     entry_points={
-        "console_scripts": ["synthesis_workflow=synthesis_workflow.tasks.cli:main"]
+        "console_scripts": [
+            "synthesis_workflow=synthesis_workflow.tasks.cli:main",
+            "morph_validation=morphval.cli:main",
+        ]
     },
     include_package_data=True,
 )

src/synthesis_workflow/tasks/cli.py

@@ -87,16 +87,15 @@ def _get_workflow_parsers(parser=None):
         parsers = {"root": parser}
 
         workflow_parser = parser.add_subparsers(
-            help="Possible workflows", dest="workflow", required=True
+            help="Possible workflows", dest="workflow"
         )
 
         for workflow_name, task in WORKFLOW_TASKS.items():
             try:
-                cls = task()
-                task_name = cls.__class__.__name__
-                doc = cls.__class__.__doc__
+                task_name = task.__name__
+                doc = task.__doc__
                 subparser = workflow_parser.add_parser(workflow_name, help=doc)
-                for param, param_obj in cls.get_params():
+                for param, param_obj in task.get_params():
                     param_name = "--" + param.replace("_", "-")
                     subparser.add_argument(
                         param_name,

src/version.py

@@ -1,2 +1,2 @@
 """ Package version. """
-VERSION = "0.0.3"
+VERSION = "0.0.4.dev0"