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@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

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  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 109 22

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 235 35

Repositories

Showing 10 of 102 repositories
  • PCR-bias Public
    BorgwardtLab/PCR-bias’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 9, 2024
  • WWL Public

    Wasserstein Weisfeiler-Lehman Graph Kernels

    BorgwardtLab/WWL’s past year of commit activity
    Python 77 BSD-3-Clause 18 4 0 Updated Sep 1, 2024
  • GraphMatchingSubstitutionMatrices Public

    Code and Data for the paper: Structure- and Function-Aware Substitution Matrices via Learnable Graph Matching (RECOMB 2024 & ICML 2024 Differentiable Almost Everything Workshop)

    BorgwardtLab/GraphMatchingSubstitutionMatrices’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jul 28, 2024
  • PST Public

    Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge

    BorgwardtLab/PST’s past year of commit activity
    Python 30 BSD-3-Clause 0 0 1 Updated Jul 17, 2024
  • proteinshake Public

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake’s past year of commit activity
    Python 93 BSD-3-Clause 7 84 2 Updated Jul 3, 2024
  • WTK Public

    A Wasserstein Subsequence Kernel for Time Series.

    BorgwardtLab/WTK’s past year of commit activity
    Python 21 MIT 7 0 1 Updated Jun 17, 2024
  • CARPE Public
    BorgwardtLab/CARPE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 15, 2024
  • NeuralWalker Public

    Official Pytorch implementation of NeuralWalker

    BorgwardtLab/NeuralWalker’s past year of commit activity
    Python 18 BSD-3-Clause 2 0 0 Updated Jun 6, 2024
  • MultimodalAMR Public
    BorgwardtLab/MultimodalAMR’s past year of commit activity
    Python 0 1 0 0 Updated May 30, 2024
  • proteinshake-v1 Public Forked from BorgwardtLab/proteinshake

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake-v1’s past year of commit activity
    Python 0 BSD-3-Clause 7 17 0 Updated Apr 29, 2024
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