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Documentation updated #1429

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Jul 28, 2021
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Documentation updated #1429

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f36e1dd
updated documentation
sarthakpati Jul 28, 2021
d52d186
html updated
sarthakpati Jul 28, 2021
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2 changes: 1 addition & 1 deletion 3_HowToGuides.txt
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Expand Up @@ -1251,7 +1251,7 @@ ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -l2s C:/refer
\endverbatim
- BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant.
\verbatim
${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -lsb C:/referenceMask.nii.gz
${CaPTk_InstallDir}/bin/Utilities.exe -i C:/referenceMask.nii.gz -lsb C:/test/predictedMask.nii.gz
\endverbatim
- Collect information from all images in a directory and put it in CSV
\verbatim
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2 changes: 1 addition & 1 deletion docs/ht_utilities.html
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Expand Up @@ -97,7 +97,7 @@
<li>Transform coordinates from world to image and vice-versa <pre class="fragment">${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test.nii.gz -i2w 10,10,30
${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test.nii.gz -w2i 10.5,10.1,30.6</pre></li>
<li>Label similarity Metrics between 2 label images: pure mathematical formulations are given as output <pre class="fragment">${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -l2s C:/referenceMask.nii.gz</pre></li>
<li>BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant. <pre class="fragment">${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -lsb C:/referenceMask.nii.gz</pre></li>
<li>BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant. <pre class="fragment">${CaPTk_InstallDir}/bin/Utilities.exe -i C:/referenceMask.nii.gz -lsb C:/test/predictedMask.nii.gz</pre></li>
<li>Collect information from all images in a directory and put it in CSV <pre class="fragment">${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/inputDirectory -o C:/test/inputDirectoryProperties.csv \
-co 1 \ # enable recursion
-cF volume \ # only process files that contain this string pattern
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