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Fixed installation issues of #3 #4

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Fixed installation issues of #3 #4

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Commits on Aug 13, 2024

  1. Code Review and dependencies update 

    The workflow uses a couple of packages like spare_score and DLMUSE. The 2 packages had conflicts before, right now we will try to solve them individually(the dependencies.txt will have the same ones for both DLMUSE and spare in the future), but snakemake builds fine with python 3.12 for now.
The only thing that we have to do now is to add the nnUnet model weights directly.
    @spirosmaggioros
    spirosmaggioros committed Aug 13, 2024
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  2. remove unused lines of code

    @spirosmaggioros
    spirosmaggioros committed Aug 13, 2024
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  3. realpath bug fix

    @spirosmaggioros
    spirosmaggioros committed Aug 13, 2024
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