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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 20 16

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    33 42

Repositories

Showing 10 of 417 repositories
  • prime-simplereport Public

    SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

    CDCgov/prime-simplereport’s past year of commit activity
    Java 58 CC0-1.0 54 383 22 Updated Dec 29, 2024
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 74 CC0-1.0 41 1,223 146 Updated Dec 29, 2024
  • pyrenew-hew Public

    Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

    CDCgov/pyrenew-hew’s past year of commit activity
    Python 5 Apache-2.0 1 46 7 Updated Dec 29, 2024
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 60 Apache-2.0 19 10 2 Updated Dec 29, 2024
  • wastewater-informed-covid-forecasting Public

    Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

    CDCgov/wastewater-informed-covid-forecasting’s past year of commit activity
    R 46 Apache-2.0 10 83 (2 issues need help) 4 Updated Dec 28, 2024
  • ww-inference-model Public

    An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

    CDCgov/ww-inference-model’s past year of commit activity
    R 22 Apache-2.0 4 75 (3 issues need help) 4 Updated Dec 28, 2024
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 2 Apache-2.0 2 0 0 Updated Dec 28, 2024
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 6 3 0 0 Updated Dec 28, 2024
  • clean-genes Public

    A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.

    CDCgov/clean-genes’s past year of commit activity
    Rust 1 Apache-2.0 1 3 0 Updated Dec 28, 2024
  • phdi Public
    CDCgov/phdi’s past year of commit activity
    HTML 35 CC0-1.0 15 232 12 Updated Dec 28, 2024
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