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Update Python versions for tests #658

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Update Python versions for tests #658

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e3e1728
Update Python versions for tests
sebastian-luna-valero Aug 9, 2024
6f415fa
rename test file
sebastian-luna-valero Aug 9, 2024
634ce6b
replace nose with pytest
sebastian-luna-valero Aug 9, 2024
81255ff
remove nose from test_umi_tools.py
sebastian-luna-valero Aug 9, 2024
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8 changes: 4 additions & 4 deletions .github/workflows/nosetests.yml → .github/workflows/tests.yml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: Python package
name: Python tests

on: [push, pull_request, workflow_dispatch]

Expand All @@ -8,7 +8,7 @@ jobs:
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: ["3.7", "3.8", "3.9"]
python-version: ["3.9", "3.10", "3.11", "3.12"]
os: [ubuntu-latest]

steps:
Expand All @@ -20,7 +20,7 @@ jobs:
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 nose pep8 pyyaml
pip install flake8 pytest pep8 pyyaml
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
Expand All @@ -34,4 +34,4 @@ jobs:
- name: Test with nosetests
run: |
export PYTHONHASHSEED=0
nosetests -v tests/test_umi_tools.py
pytest tests/test_umi_tools.py
2 changes: 0 additions & 2 deletions tests/test_umi_tools.py
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Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,6 @@
import sys
import platform

from nose.tools import ok_

PYTHON_VERSION = platform.python_version()
IS_PY3 = sys.version_info.major >= 3

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