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@CHRF-Genomics

Child Health Research Foundation

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  1. Paratype Paratype Public

    Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.

    Python 8 1

  2. extract_position_from_genbank extract_position_from_genbank Public

    Detect phage, repeat and variation regions in genome using a genbank file

    Python

  3. filter_SNP_quality filter_SNP_quality Public

    Filter VCF file for unambiguous bases and high quality

    Python

  4. paratyphiA_acrB717_screening paratyphiA_acrB717_screening Public

    Detect AcrB-717 mutation from mapped VCF file of Salmonella Paratyphi A

    Python

  5. ncovBangladesh ncovBangladesh Public

  6. CHRF_Paratyphi_scripts CHRF_Paratyphi_scripts Public

    Other scripts and color scheme used in the article for Paratype

    Python

Repositories

Showing 9 of 9 repositories
  • PARV4-Analysis Public
    CHRF-Genomics/PARV4-Analysis’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 17, 2024
  • CHRF_Paratyphi_scripts Public

    Other scripts and color scheme used in the article for Paratype

    CHRF-Genomics/CHRF_Paratyphi_scripts’s past year of commit activity
    Python 0 0 0 0 Updated Aug 12, 2024
  • DPPT-RapidDiagnosticTest-EntericFever Public
    CHRF-Genomics/DPPT-RapidDiagnosticTest-EntericFever’s past year of commit activity
    R 0 0 0 0 Updated Aug 2, 2024
  • Phage_Analysis Public
    CHRF-Genomics/Phage_Analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 27, 2024
  • Paratype Public

    Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.

    CHRF-Genomics/Paratype’s past year of commit activity
    Python 8 1 3 0 Updated Oct 17, 2023
  • ncovBangladesh Public
    CHRF-Genomics/ncovBangladesh’s past year of commit activity
    0 0 0 0 Updated Jan 5, 2023
  • filter_SNP_quality Public

    Filter VCF file for unambiguous bases and high quality

    CHRF-Genomics/filter_SNP_quality’s past year of commit activity
    Python 0 0 0 0 Updated Jun 1, 2021
  • paratyphiA_acrB717_screening Public

    Detect AcrB-717 mutation from mapped VCF file of Salmonella Paratyphi A

    CHRF-Genomics/paratyphiA_acrB717_screening’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2020
  • extract_position_from_genbank Public

    Detect phage, repeat and variation regions in genome using a genbank file

    CHRF-Genomics/extract_position_from_genbank’s past year of commit activity
    Python 0 0 0 0 Updated Nov 6, 2020

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